CI01000036_01008391_01018664


Basic Information

Item Value
gene id CI01000036_01008391_01018664
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 1008084 ~ 1019001 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000036_01008391_01018664.mRNA
ATACACACATAATATGCACTGCAAGAGCAACATCATTTCAGTGTAAATATCAGCTGTAATTAAAGTTTCAAACCACTTCAGGTCCTTTAGTGAATTAAAAGCTCGACTTATAGGCCAGTTTGCTTTAAAAACTAATGAAGAACATTCCAATTATTGCTGATGGATGGACTTCCGGAACGATAATCCGTTTAATGGTCCACATACAGAGTTTCAGAAACGACGAAGTCCAGTTGGCAGCATGAGCAACTACATACATGTGACCCGTGACATTACACTCACGTGACACATTTAAAGCGACTTGTTTGAGTTTGACGCGGGTTCATCAGCTGACTCGACCATGGGGGATCAGTTTGTAAGAGAAGTCCTCGGTCTGTGTTTGCAAAGGCTTGCTATAGAAGAAGCTACTAACTCTGAGCTCGAATTTATTGAGGTGGTGAAGAACTTTGAAGTTGCCCGGAAGAAATGGCTGCATGCAGAGCTGGAGCTGAAAAAACAGAAGGAGTTGCTAGTGAAGTCTGATGTAGCTCGAGGTGCTCTGGAGGTCAAACTCAAACATGCTCGAAACCAGCTAGACGTGGAGATCAAGAAGCGCTACAAAGCTGAGGCAGACTATCAGTGCCTGGAGCGGCAGATGCAGTTGATATGTGACGTACTGGTGCATGACAGCAAGTCAAGTGCCTGTCTCAATGATGAGCAGAGGTCAATGCTGACCAGCTTCAGTCACAAAGGAGCCAGTGTCCCACAACACCGAGGAAGAAGGTACCTCAACATTCAGCATGCTCTTCATTTAGTTCTCAGTTCACTGGTGTTTTCCCCCTTTCGCATTGCTGTTTTCCATCATGTGTCTTTATATCAGGACTTGGACAGCACAACGTTTGTTAAGCCTCTAAAGTCAAGAGCTCGTGAGAGAAGACGTTCATCAATGGGCCCAAGTGTTGGTCCTCCGATTTCAAAACGAGGAAGAGTCAGCGGGCGTTCAGGAGATCTACTGGGGACTAGACCACTGGAGAAGGAAATCGAGACGACTGTTGTGAAGGCGTCTGTCACTACCCCAGAGACTGGAGGTCAGATTCACATGGTGATTCGTCCCGAGACATGCGTACCATGTGGGAAGAGGATTCGCTTTGGGAAGATGGCCGTAAAATGCAGAGACTGTCGAGTGGTGAGCCATCCTGAGTGTAAACAACTATGTCTGGAGAAGTGCAGCCCTAATGCTCATGGTTCAGCTCAGCCTAAAGAGGAGACATTAGAAAGCTTTGCCCCCTCCACACGTCCACGGATTCCCTCTTTGATTGTTCAGTGTGTTCATGAAATTGAGAGAAGAGGACTTGAAGAGGTGTTTTTACTAAATAATACACCAACACAGGGATGGTTTCTCAAGCTGAAAAAGGGTATTTACAGAGTGCCGGGAGGAGAGCGACTGGTGAAGGAACTGAGAGAGAAATACATGTGTGGGAAAGGCACGCTGATGCTCCATAAAGTAGAAGAGGTTCATGCTGTCTGTGGACTACTCAAAGACTTCCTGAGGAAACTCAAGGAGCCTCTCATAACATTTAAGCTACACAGAACATTTATGGAAGCTTCTGAGATGGCTGATGAAGACAAGAGCGTAGAAACATTAATAAAGAATATCAAAGAGCTGCCGCAGCCTAACAAAGACACCCTGGCCTTCCTAATGCTGCATTTGCAGAGGGTAATGCAGAGTCCGTTGTGTCAGATGGATCAGAATAACTTGTCCAGAGTGTTTGGCCCCACTATCATTGGTCATGGGATGTTAGAACCTTCTCCCATGACCATTATGAGAGACACAAACACACAACCCAAAGTAGTGGCTCGGTTACTGTCGTTTCCTTCAGATTTCTGGGAAGGCTTTCTAGCTGAGGAGAAGGATCCACTTGTCCCTCCTGTGGTTGATTCCAACGTCGGCAATGTCTGTCCAAGCACTAGCAGAGATAAGATATTCAAACCTCTGACCTCTCCTGAGTTAAGCAAATATTCTAAAACTACATCTGGTGGCTCAATCAAGGGTCGGATCAAACACTTTGGTGGCACTTTCAATAACCCAAGCAAACCAAGAAATGAACCAGGAAAAAAGAAGTTCTTCACATCCCCCAAATGATTTATGTGTGTGTATAAATGTGTATTTTGTGTGCCAGTTAGTTGCACAGGGACACTTTGCTTCGGTGGCTTGAACTGTTTTTTCCTACCACACGAAATGAAACACTTTAGCACTTTATATCCTACCTTGGAAAATAACTTTTCTTATGAATGTAAGTCTGTCCAGAAAGAAAGAATCTTGAAACATGAGACTACACTCTTGGTATTTTTTTGTAAAAGGTTTAAGTAATTATGTATAAAAGAAATGTCCTGGAAAATATCTAAAGGTGGCATAAACATGGTGAAATGGTGTATCAATTTGAAATAAA
>TU197161
TTTACCTTATATTTCAATAAACTTATTCTAACTTATTTGCAACAGGTAGTGGCTCGGTTACTGTCGTTTCCTTCAGATTTCTGGGAAGGCTTTCTAGCTGAGGAGAAGGATCCACTTGTCCCTCCTGTGGTTGATTCCAACGTCGGCAATGTCTGTCCAAGCACTAGCAGAGGTACATGCATCAGTATCCACCATGTTTTGAGTTAAACGTCGGCTGGTTAAAATTAAACTGCTCACTTATTGCATATTTAATGGAATTTAAAGGGTTAGTTCACCCAAAAAGGCATTTAAAGGGTTAGTTCACCCAAAAAGGAAAATTATCCCATGATTTACTCACCCTCAAGCCATTCTTGGTCTATATAACTAATCTTTCAGACAAACACAATTTGAGATACATTTAAAAATATCCTGGCTCTTCAAAGCTTTATAATTGGGG

Function

NR:

description
LOC553480 protein, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16733 RACGAP1, Tum; Rac GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000036_01008391_01018664.mRNA False 2426 mRNA 0.44 14 1008084 1019001
TU197161 True 436 lncRNA 0.38 1 1009177 1009612

Neighbor

gene id symbol gene type direction distance location
CI01000036_00988998_00991598 NA coding downstream 16351 988998 ~ 991733 (-)
CI01000036_00792090_00794146 NA coding downstream 213376 791987 ~ 794708 (-)
CI01000036_00666753_00752077 THSD7B, THSD7BA coding downstream 256007 666722 ~ 752077 (-)
CI01000036_00585386_00663579 THSD7B, THSD7BA coding downstream 344505 585386 ~ 663579 (-)
CI01000036_00553191_00555970 NA coding downstream 452114 552934 ~ 555970 (-)
CI01000036_01250575_01252253 CHPF coding upstream 230795 1249796 ~ 1252643 (-)
CI01000036_01265331_01269187 NA coding upstream 245723 1264724 ~ 1269211 (-)
CI01000036_01396572_01398922 FEV coding upstream 377054 1396055 ~ 1398922 (-)
CI01000036_01406109_01409167 CRYBA2B, CRYBA2, CRYBA2A coding upstream 387050 1406051 ~ 1409466 (-)
CI01000036_01417031_01422737 UMPS coding upstream 397886 1416887 ~ 1422737 (-)
G173768 NA non-coding downstream 61412 946171 ~ 946672 (-)
G173555 NA non-coding downstream 78718 922755 ~ 929366 (-)
G173720 NA non-coding downstream 151010 856807 ~ 857074 (-)
G173717 NA non-coding downstream 162738 845102 ~ 845346 (-)
G173553 NA non-coding downstream 364871 606328 ~ 643213 (-)
G173998 NA non-coding upstream 248165 1267166 ~ 1267686 (-)
G174014 NA non-coding upstream 282934 1301935 ~ 1302312 (-)
G174025 NA non-coding upstream 303625 1322626 ~ 1322837 (-)
G174028 NA non-coding upstream 309394 1328395 ~ 1328665 (-)
G174084 NA non-coding upstream 470073 1489074 ~ 1489537 (-)
G173528 NA other downstream 47707 959421 ~ 960377 (-)
G174002 NA other upstream 255777 1274778 ~ 1275195 (-)
G174386 NA other upstream 845933 1864934 ~ 2010840 (-)
CI01000036_02022324_02026053 NA other upstream 1006907 2021947 ~ 2031983 (-)
G173780 NA non-coding upstream 845 1010457 ~ 1010717 (-)
G173782 NA non-coding upstream 1800 1011412 ~ 1011767 (-)

Expression


Co-expression Network