G173528


Basic Information

Item Value
gene id G173528
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000036
NCBI id null
chromosome length 2115676
location 959421 ~ 960377 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU197122
AATAAGAAACCCTTGAGCTTTAGTAAGAGCAGCTTCCACCTGTTGAAATGAATGGAGCAACACTTCCAGCAGCAGATGAGCTTGTGTAATAGTAAGAAGGAGTTTACCTTTAGCTCTGCTGGTGTGAATTCTGGCGCGCACCCAGATCTGCTGTTCTGCCTTCTCGGGTGTCAGGTCCTGGACACGCACCAACGCCCTGTCTGCCTCCATCCAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACATCAAAGACGACAGGCCTCCCCCCTTGTACACAGATCCCCACAAAGACATTCACTCGGATTACAAAGCCACCGGGAGGAGGGCTAATAAATATGAAACATAACAAGCCCCGTCTGAAAGGTGACCATCACGTGAATTCTTCTCCGTTTTGACAGATCCAGTGTCACCCTGCCTCCACTGACTCACATTATGACTTTATTATGAGGCAGCGGAGACGGGGCAGTCCCGCTTAGCCCCAATGTAAGTGCTCAGGGCATTTGGCTGATCTAGAATCCACCCACATGAAAGCTTAGTCTATCTCTGCCCGAGAGCAATGCTGGTGGGAGACGACTTTGTTCTGTAGCAGCAGAGCTTAAAAACTCGCAGCCGGACAGTTGGGAGTAATGTCACCCTAATTTCTCATCCGAGATTTATCTCATACTGTTATTCAAGACTATTATGTGTGACAGCGAGGGGAGGAACATCAGGGAGAGCTGAAGGGGACGTCAGGGAGATCCCGAAAGCTTTAGATTATCTCTTAAGCTCTAAGACATTCCTAATTATCATTCTAAGGCAAATTTTGCCCAGGAAAACCTGTCTATCATCATCCTGAGGGAGCATGATGCCCTCCTAAATCTCCACTTAAAGCTGAGAAGGACACTGACCCAGTTTCTGCTGGGATTGGACCATAGGGCAGATCCCATAGCGATCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU197122 True 937 TUCP 0.49 2 959421 960377

Neighbor

gene id symbol gene type direction distance location
CI01000036_00792090_00794146 NA coding downstream 164713 791987 ~ 794708 (-)
CI01000036_00666753_00752077 THSD7B, THSD7BA coding downstream 207344 666722 ~ 752077 (-)
CI01000036_00585386_00663579 THSD7B, THSD7BA coding downstream 295842 585386 ~ 663579 (-)
CI01000036_00553191_00555970 NA coding downstream 403451 552934 ~ 555970 (-)
CI01000036_00547746_00550751 NA coding downstream 408557 547401 ~ 550864 (-)
CI01000036_00988998_00991598 NA coding upstream 28621 988998 ~ 991733 (-)
CI01000036_01008391_01018664 NA coding upstream 47707 1008084 ~ 1019001 (-)
CI01000036_01250575_01252253 CHPF coding upstream 289419 1249796 ~ 1252643 (-)
CI01000036_01265331_01269187 NA coding upstream 304347 1264724 ~ 1269211 (-)
CI01000036_01396572_01398922 FEV coding upstream 435678 1396055 ~ 1398922 (-)
G173768 NA non-coding downstream 12749 946171 ~ 946672 (-)
G173555 NA non-coding downstream 30055 922755 ~ 929366 (-)
G173720 NA non-coding downstream 102347 856807 ~ 857074 (-)
G173717 NA non-coding downstream 114075 845102 ~ 845346 (-)
G173553 NA non-coding downstream 316208 606328 ~ 643213 (-)
G173780 NA non-coding upstream 50080 1010457 ~ 1010717 (-)
G173782 NA non-coding upstream 51035 1011412 ~ 1011767 (-)
G173998 NA non-coding upstream 306789 1267166 ~ 1267686 (-)
G174014 NA non-coding upstream 341558 1301935 ~ 1302312 (-)
G174002 NA other upstream 314401 1274778 ~ 1275195 (-)
G174386 NA other upstream 904557 1864934 ~ 2010840 (-)
CI01000036_02022324_02026053 NA other upstream 1065531 2021947 ~ 2031983 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G85779 fam117b non-coding NC_047599.1 CM018545.1 20007273 ~ 20009154 (-)
tiger barb (Puntius tetrazona) G68895 NA non-coding NC_056707.1 CM032076.1 9176324 ~ 9178926 (+)