G85779 (fam117b)


Basic Information

Item Value
gene id G85779
gene name fam117b
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20007273 ~ 20009154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101871
tgaaaggaaaaaaaaaacactcatataTTGAATGAGTAAGGTAGACATGTTACCTTTGTGCACAGGTGAGCTTGGGCTTATTCTCTCAGGTGACAGTCTGTCATTGTCAGGTGAGCCCTGCTGTGAAGATGCtgaagaggaagatgaggaagaggaagagggggTGCAGGAGGAACACACTGGCCCTGGAGGATGTGAGCCAGCTGTCAGCACCAAACTGTCCGTCAGTGAGCTGAGCAGCagggagggagagtgagagccGCTGTGAGAGGGCACACACAGGGAGGAAGGCACGCTGGCATGAGCTGATGCCACACTGACCTGCGGGCACTGCGTGTGAGGAGCCACGGGAGAACTACTTCTGAGTgccgaggaggaggaagaaaaagaagaagaggaagaagaagaggtcgCGGCGCGAGAAGGAGCGCACAGGCGGCTTCCGGCTGCGTCGCATCCGCCGCTGCAGCATTTAACGTTAGCGCtatttcctcctcctcctcctcctccgccgcCGCCGCCGTTGGACAGCGCCATCCTGGTCGGTAGGGGGGGCTGTGGCTGTGCTTTGAGCTGGAACGGCACGGTGGCTTTCATGGGCAGCAGGCGGCTCAGTAAACTCACCCCGGCGCTGAGACCCGAGGCTCCGCTCGAACTTCCGCCGCTCACCGAGCTGCAGCTGGACGTCGGCGAGCCGTTTTTACGAACTCTTTGGGACATGACGCTCACAAACTAccgaaaaaggaagaaaaaaaaaaagaagtgttaaCATACGCCAGGTATGTTTGAGGTCGTGGACACTCTTTTATCCTTCTTGTGTCACTCCATGCAGCGTGcgtgtgtctttttttgtttgtttgttttttgtgcacGGTTCCGCACCGTGGCTATAGAGCAGAACCGTTCCCGTCCTGAAGTAAACTACACAGCCGTGTGAGCCACGCACCGTCAACTCCTGccaaagccccgcccacacagCCCTCTGATTGGCCAGTCCTCGACATAAGACAACTTTTCATTGGCTGGTTAGAGGATCCTTTTAACTCTTTAAAGTTATACAGGCCTGGTGGAGATCTCGTACAAAAAACACTGTACAAAGCAATAGTGCAGTGTGTCATATGTCATCTTATAACCGCATcttattcacttattcactatatagtgcactactttgacatgacatttttatttccacGAAAGTACACTGGGAAGTCCAGTGTGTCCCAATATGAAATCCCATAATGCATAGTAAAGATTGGCTCCAGATTAAGTACCTTACCTAGTAGGACAGATTATGATTACACATTTCTCTCCCTGTTATTAGCGCCATGTTTATTTTAGATGCTGTTTAGAAAAGGCTTTGTTGTGGGGAACACGTGCTTTTGCATTGATGCTGTGGCTTCAACACCCTCCTGTGGTCAAAATGCTGATACTGCTGTGGATCCTCTCCCCTCCTGATTCACACCTGGAGCTTCTGCAAACGTGATTTCCATTTGTTTCTGTGGCTAATCCCACATCCATACCCTAAACAGTTCCACTTCCTCAAAACACTTTATGCTCAACTCTCACCCTGTCCTCAGTGAATAATTTCACCTGCATACTGCTAAGAACTGCCGCTGTGATCATAAAGCCTGTTCTGCACTCAACCCATGACTCTGATCTACGATATGCTCAtaatgaacatcctttcaacacactcagtagTGTCTGACTTCACAGTATACAGTTGTGAAAGAGTAATGATTAATAACTGCACTATCCGATGTCATGCagaagaggatggatt

Function

symbol description
fam117b Orthologous to human FAM117B (family with sequence similarity 117 member B).

NR:

description
PREDICTED: protein FAM117B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101871 True 1786 lncRNA 0.49 3 20007273 20009154

Neighbor

gene id symbol gene type direction distance location
actr3 actr3,LOC103365687,LOC107660280,LOC101066039 coding downstream 89190 19904974 ~ 19918083 (-)
LOC113525964 dpp10,LOC108424244,LOC107569026,LOC107572644 coding downstream 130278 19786091 ~ 19876995 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding downstream 304625 19692961 ~ 19702648 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding downstream 325733 19675915 ~ 19681540 (-)
tmem37 tmem37 coding downstream 439212 19565266 ~ 19568061 (-)
LOC113525902 LOC108266171 coding upstream 39637 20048791 ~ 20077583 (-)
fzd7a fzd7a,fzd7,LOC108267025,LOC107752890,LOC107668396,LOC107751502 coding upstream 71104 20080258 ~ 20083368 (-)
raph1a raph1,raph1a,LOC107668371,LOC107688759,LOC107592998,LOC107752894 coding upstream 229945 20239099 ~ 20266541 (-)
fer1l6 fer1l6,LOC107593018 coding upstream 335769 20344923 ~ 20359285 (-)
prkag3b prkag3,LOC108266105,LOC107738101 coding upstream 353002 20362156 ~ 20368428 (-)
G85778 bmpr2 non-coding downstream 251 20003056 ~ 20007022 (-)
G85785 bmpr2 non-coding downstream 6841 19999151 ~ 20000432 (-)
G85781 bmpr2,bmpr2b,LOC107751503 non-coding downstream 14517 19992527 ~ 19992756 (-)
G85784 NA non-coding downstream 24161 19982753 ~ 19983112 (-)
G85782 NA non-coding downstream 30666 19975405 ~ 19976607 (-)
G85978 NA non-coding upstream 474015 20483169 ~ 20509623 (-)
G86260 NA non-coding upstream 791135 20800289 ~ 20800550 (-)
LOC113547596 NA non-coding upstream 956746 20965900 ~ 20976155 (-)
G86350 NA non-coding upstream 1018372 21027526 ~ 21027832 (-)
G86621 NA non-coding upstream 1433742 21442896 ~ 21444084 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 421170 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 512758 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 1038781 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 2307293 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 2626101 17371979 ~ 17381172 (-)
G85848 NA other upstream 217574 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 385317 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1126892 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 1290718 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 1448579 21457733 ~ 21459404 (-)

Expression


Co-expression Network