abcb6b (LOC108266852,LOC108423985,LOC107596549,LOC107750068)


Basic Information

Item Value
gene id abcb6b
gene name LOC108266852,LOC108423985,LOC107596549,LOC107750068
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20394471 ~ 20423244 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU102080
aacatattagtttttacatttatttgttgaaCAAACTTATCCAACATTAAATATCTCTGTTGGAAAAGGTATGTGAACCTTTGCTTTCAGTAACTGGTGTGACCCCcttgagcagcaacaacttCAACCCCCAAACCATGATACTGCCACCCTATGCTTCACGGTTGGGATGAGGTTCTTATGTTGGAatgtagtgtttgttttttgccaaacataacgcttttcattttaaagaaaaaagttctattttggaTTCATCTGTCCACAGAACATTCTTCCAGTAGGCGTCTTGCTTATTGATGTGGTCTGAAACTTCAGACAGGCAGCAATGTTCTTTTTGGAGAGTAGTGGCTTCCTCCTTGCTATCCTGCCATGCGCCCAAttcttgttcagtgtttgcTTGATAGTAGGCTCATGAACATTGACATTACTCAATGCAAAAGTGGCCTGTAGGTCCTTAGATGTTACCCTTGGGTTCTTTGTGACCTACCATAATATTATTCACCACACCCTCGGAGTGATTATTGTTGGACGACCACTACTGTGTAACAGTGGTGCTaaatttcctccatttgtatATCATCTGCCTCACAGTGGATTGGTGGAGGCCAAActctttagaaatggttttgtaaCCTTTTCCAGCCTTgtgaactctttttttttttttgagggtcCCCTGAGGTCCTCAGGAATCTGCTTTGATTAAGGCATGGAACACTTCCATAAACCTGTGTGGTGAAACCCAGACTTTGATAGTGAAGACCCAAGTTTATGTTCTTGGAACATGGGAGGGTCTGCTAAACCCACGCCTGATTGCCGTCCACTTGATTGAAACTTCTCACTTCAATTACCCCTTTAAATGAGCTCATACTCTAagaggttcacatacttttcccaacaaatatttaatgttggacaattttgctcaataaataaatgtaaaaaccgTAATGGTTTTGCGTTATTTGTTTAACTGGGTTCTCTTTATCTAGTTTTAGGACTTAGATGAAGATTTTACTACATTTCATatcaaatttatgcagaaatacagaaaattctaaagtgttcacaaactttccaGCAGCACTGTACTTTAAGGAGATGAATAGGAAAAAGGGACACGATTATTGATTGACAGAATTTATAAGgaaatcagtgtttttataGACTTTGTTTTACTCATGTTTGTCAATGCTGCTGATGTAATAAAACTCAGATGTATTGTTTATAAGACACTcaattgaaataaatacagG
>TU102081
aacatattagtttttacatttatttgttgaaCAAACTTATCCAACATTAAATATCTCTGTTGGAAAAGGTATGTGAACCTTTGCTTTCAGTAACTGGTGTGACCCCcttgagcagcaacaacttCAACCCCCAAACCATGATACTGCCACCCTATGCTTCACGGTTGGGATGAGGTTCTTATGTTGGAatgtagtgtttgttttttgccaaacataacgcttttcattttaaagaaaaaagttctattttggaTTCATCTGTCCACAGAACATTCTTCCAGTAGGCGTCTTGCTTATTGATGTGGTCTGAAACTTCAGACAGGCAGCAATGTTCTTTTTGGAGAGTAGTGGCTTCCTCCTTGCTATCCTGCCATGCGCCCAAttcttgttcagtgtttgcTTGATAGTAGGCTCATGAACATTGACATTACTCAATGCAAAAGTGGCCTGTAGGTCCTTAGATGTTACCCTTGGGTTCTTTGTGACCTACCATAATATTATTCACCACACCCTCGGAGTGATTATTGTTGGACGACCACTACTGTGTAACAGTGGTGCTaaatttcctccatttgtatATCATCTGCCTCACAGTGGATTGGTGGAGGCCAAActctttagaaatggttttgtaaCCTTTTCCAGCCTTgtgaactctttttttttttttgagggtcCCCTGAGGTCCTCAGGAATCTGCTTTGATTAAGGCATGGAACACTTCCATAAACCTGTGTGGTGAAACCCAGACTTTGATAGTGAAGACCCAAGTTTATGTTCTTGGAACATGGGAGGGTCTGCTAAACCCACGCCTGATTGCCGTCCACTTGATTGAAACTTCTCACTTCAATTACCCCTTTAAATGAGCTCATACTCTAagaggttcacatacttttcccaacaaat
>XM_026912788.2
GCAGAAAGTCATGTGACACAGCAGCCGCATGACAACTGATAAGGATGTTCCTCAAAACATGCTTTGAACGACAGAAAAGATTAATTATAACTCGTTTTGCAAGGGAAAAATGGTCCCAAACACGTTAGAACCTGGTAGTGGCGTTGTTCTAATAGAGAAGCTGTGaatgtgcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacacaagCATGTTTCCAGAAGGCTCATTGTTTGTGACTCCAGTGCAGAGCTGACCAAAATAGCAATGTTTTTAGCAACTTGCTAAGATAAATTCTCAGATTAATTGCACACTGGGAACAAATGGCAAGCacaaggaagaagaaagaagctAATTCAGCAGCGTTTACATTGTGTGTGGAGCCCGACAATGACAGGCAGCAAGCTCAGGTTCCCGGTGTCAGAGTCGTGTCCCAGTCTAAATGGCAAGGCTGGATAAGGAAAATAACTCTGCTAGTGCCCTACATGTGGCCCCGGTCAAGCATCCCGCTACAGGTTCTCGTGTTCCTGTGTATCTGCCTCCTGGGCCTGGAGCGACTCATCAACGTGCTAGTGCCTGTCTACAGCAAGAACATAGTAAATCAGTTATCAGAAAAGGAGAGTTGGAGAAGCCTAGCAACCACTGTGTGTATCTATGTTCTTCTCAAGTTCCTACAGGGTGGGGGAGCAGGGACATCAGGCTTTGTCAGTAACATGCGTTCTTTCCTGTGGACGCGCGTTCAGCAGCACACCAGTCGCACAGTGCAGGTGGAGTTGTTTGCCCACCTGCATGCCCTGTCTCTGCGCTGGCACCTGGGAAGAAAAACGGGTGACGTCCTGCGCAGCATCGATCGTGGCACGGCCTCCGTCAGCCACCTATTAGACTACATTGTATTCACCATGCTGCCAACTATAGCTGAcatcatcatcgccatcatTTATTTTGTCTCTTATTTTAACGCCTGGTTCGGTCTCATCGTCTTTATCTGCATGTTCCTCTATCTCACATTGACTATAATCATCACAGAGTGGAGAACCAAGTACAGACGTGAAATGAACATGCAGGATAACAACGCCAAGTCTAAGGCAGTAGACTCACTTCTCAACTTTGAAACTGTAAAGTACTACAATTCAGAGAATTATGAAGTCAGGCGCTTTGAGGATGCTATCTTAAAATATCAGACCTCAGAGTGGAAGACAAATGCCTCTCTGGCCCTGCTAAATCAAACCCAAAACTTGATCATAGGCGCTGGCCTGCTCGCTGGATCTCTGCTCTGTGCATACTTTGTCACAGTGGACCAGTTCCAGGTTGGGGACTATGTTCTGTTTGGGACCTACATTGTCCAGCTTTACATGCCTCTCAACTGGTTCGGCACATACTACAGGATGATCCAGGCTGCTTTTGTAGATATGGAGAACATGCTTGAGCTCCTCACTGAAGAGAAGGAGGTGAAAGATGATATGAATGCAGTAGATCTGCTTTGTACTGAAGGGAGAGTTGACTTCCGAAATGTATGTTTCAGGTACACTGCAGGGAAAGACATTCTCAGAAATATATCCTTCACAGTGATGCCTGGACAAACTGTAGCACTGGTTGGACAGTCGGGGTCGGGCAAAAGCACCATCATCCGGCTGCTTTTCCGATTTTATGATGTGCAAGAAGGCTCCATCCTTGTTGATGGTCAGGACATCTCAAAGGTGAAACAGAGCACTCTCCGTTCTTACATTGGGGTGGTCCCTCAGGATACCGTTCTCTTTAATGACAACATCCGGGAGAACATCCGTTATGGACGGATCAGTGCCACTGACCAGGAAGTGGAAGAGGCTGCATTGGCTGCTGACATCCACCATAAGATCCTGTCCCTTCCAGATGGATATGACACTCAGGTGGGCGAGAGGGGCCTCAAGCTAAGTGGGGGTGAGAAGCAGAGAGTGGCCATCGCTCGCACCATCCTCAAAGCCCCCAGAATCATCCTGCTGGACGAGGCCACTTCTGCtttagacacacaaacagagcgCAACATCCAGGCCTCGCTTACCAGAGTGTGTGCCAGCAGGACGACTATTGTGGTGGCACACAGGTTATCCACTATAATTGCATCGGACCTGATTCTGGTTCTGCATGAAGGCCAGATTGTGGAGCGTGGAAGGCACGAGGAGCTGCTGGCCGTGCACGGACTGTACTCAGCCATGTGGcaaaaacagcaacagcaacaggaTCTAGAACCAAGTGCTTCCTCAGATACAGAACCAAATGAGCAGCAAGGTGGAGAATGACTGAAGTCCAGGTAAAAGTGAAGGAGCCAAAGATACAAAACATGTCGAGTGGCCTTGGGCAGAAGAAAATATTCAAGGAAGTTTCTTGATAAGCATTTACTGCTTAACAGTTATTGTGCCAAGCTGTTACTTTCTAGTTTAAATCCTTATAACATGCTGACTGTAAATGTGAAGACATTTACattaagaaaacacaaaactgtACCATGGCCGTGCTTTGAGATCTGTGCATTCTCAGGGAGCCTATTTGATTATTTCAACTGGTGCCATCAATGGTGTACCTGTGAATTGCCAGTGAGCAACCATTTTACATCTGTCTGCAAAATTGACTTGTGAGAGGTGAGGTACAATCTAGACAGGGATTTGTTTGCCTTGTGGAAAGTAACTGAAGTACCTACAGTGTCActagaaagtttgtgaaccctttgcaattttctgtatttctgcataaatttgacctgaaatgCGATCTAAAGTCCTAAAACTAGATGAAGAGAACCCTGTTcaacaaatgacacaaaaacatattagtttttacatttatttgttgaaCAAACTTATCCAACATTAAATATCTCTGTTGGAAAAGGTATGTGAACCTTTGCTTTCAGTAACTGGTGTGACCCCcttgagcagcaacaacttCAACCCCCAAACCATGATACTGCCACCCTATGCTTCACGGTTGGGATGAGGTTCTTATGTTGGAatgtagtgtttgttttttgccaaacataacgcttttcattttaaagaaaaaagttctattttggaTTCATCTGTCCACAGAACATTCTTCCAGTAGGCGTCTTGCTTATTGATGTGGTCTGAAACTTCAGACAGGCAGCAATGTTCTTTTTGGAGAGTAGTGGCTTCCTCCTTGCTATCCTGCCATGCGCCCAAttcttgttcagtgtttgcTTGATAGTAGGCTCATGAACATTGACATTACTCAATGCAAAAGTGGCCTGTAGGTCCTTAGATGTTACCCTTGGGTTCTTTGTGACCTACCATAATATTATTCACCACACCCTCGGAGTGATTATTGTTGGACGACCACTACTGTGTAACAGTGGTGCTaaatttcctccatttgtatATCATCTGCCTCACAGTGGATTGGTGGAGGCCAAActctttagaaatggttttgtaaCCTTTTCCAGCCTTgtgaactctttttt

Function

NR:

description
PREDICTED: ATP-binding cassette sub-family B member 6, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05661 ABCB6; ATP-binding cassette, subfamily B (MDR/TAP), member 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU102080 False 1259 lncRNA 0.38 1 20394471 20395729
TU102081 False 906 lncRNA 0.41 1 20394824 20395729
XM_026912788.2 True 3485 mRNA 0.45 18 20395067 20423244

Neighbor

gene id symbol gene type direction distance location
ttll4 ttll4,LOC107593000,LOC107668375 coding downstream 10901 20370841 ~ 20383570 (-)
prkag3b prkag3,LOC108266105,LOC107738101 coding downstream 26043 20362156 ~ 20368428 (-)
fer1l6 fer1l6,LOC107593018 coding downstream 35186 20344923 ~ 20359285 (-)
raph1a raph1,raph1a,LOC107668371,LOC107688759,LOC107592998,LOC107752894 coding downstream 127930 20239099 ~ 20266541 (-)
fzd7a fzd7a,fzd7,LOC108267025,LOC107752890,LOC107668396,LOC107751502 coding downstream 311103 20080258 ~ 20083368 (-)
nrp2b nrp2b,LOC108266767,LOC108423983,LOC107668386,LOC107716756,LOC107752901,LOC107688766 coding upstream 30086 20453330 ~ 20524772 (-)
pard3bb LOC108266848,LOC108423981 coding upstream 129149 20552393 ~ 20825374 (-)
fn1a LOC108266812,LOC108423980,LOC107688749,LOC107716781,LOC106582526 coding upstream 460540 20883784 ~ 20908539 (-)
LOC113526297 LOC108267042 coding upstream 510274 20933518 ~ 20937574 (-)
cfap65 cfap65 coding upstream 514748 20937992 ~ 20960443 (-)
G85779 fam117b non-coding downstream 385317 20007273 ~ 20009154 (-)
G85778 bmpr2 non-coding downstream 387449 20003056 ~ 20007022 (-)
G85785 bmpr2 non-coding downstream 394039 19999151 ~ 20000432 (-)
G85781 bmpr2,bmpr2b,LOC107751503 non-coding downstream 401715 19992527 ~ 19992756 (-)
G85784 NA non-coding downstream 411359 19982753 ~ 19983112 (-)
G85978 NA non-coding upstream 59925 20483169 ~ 20509623 (-)
G86260 NA non-coding upstream 377045 20800289 ~ 20800550 (-)
LOC113547596 NA non-coding upstream 542656 20965900 ~ 20976155 (-)
G86350 NA non-coding upstream 604282 21027526 ~ 21027832 (-)
G86621 NA non-coding upstream 1019652 21442896 ~ 21444084 (-)
G85848 NA other downstream 156856 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 808368 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 899956 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 1425979 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 2694491 17695290 ~ 17699980 (-)
phgdh phgdh other upstream 712802 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 876628 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 1034489 21457733 ~ 21459404 (-)
G86592 NA other upstream 1041922 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 1083192 21506436 ~ 21519959 (-)

Expression


Co-expression Network