LOC113526297 (LOC108267042)


Basic Information

Item Value
gene id LOC113526297
gene name LOC108267042
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20933518 ~ 20937574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026913223.2
AGTCACATGGAAAGAGACACTCATTATCAAGTTAAGGATTATACCACTGAAAGATAACGGCTAGATCCAGTGCTAGTTCGGGTATTTTTTTAAGGGAATGTAGACATGGGTCAGTACTGGAAGAACTATTTGTTTTGCGAAGATGAGAAAGATATCTATAATGTGCTGATTGTGTAATGGAATGCACTGGAGATCCTTGTAGCACAAATGGGGGCGTTTTATACTTCCTGTTGTCACAATGATGAAAAAGAAGAGCAGAATACTATATTATGTTCCCAGTCCTGGAGTAAGGCTAGTGTGTCGAGTGAAAGGGACGTGTGCATGTCAGAACTGGGGCAAGAGTGGAAGCCGTGGAGGCTTCCTtacacctccacctccatcacAGGAGGGGAGTCGGACCAGGAGCTGCAGACTTTTATCATGATGAGGAACCAGGTGGATAAAGACACTGAGgagtGGGAGAAGCTGAACTACGATATTCACGCACTGAGATATGCTCGTCGGGAGGTGTATGTGCGCTGGAAGAAGATCCTACTGCTGCTGGGTTACCAGAGGGAAGTGGATTCACTGTTAGCAGTGAATAAGCAGAGTGTAATGGCTGTAGGAGAGAATCTGGAGAGAGCCCGAGACCTGCTTTACACAGTGTGTGAGGAGTCCAGCCTCTTCCCCAGCGGCGTAGAACCCAACGACAGATTCCTCTTCGTCATGGATCGCTTGGTGTCTTTGGACAGCGCTGAGGACTTTGTTAGATTGGCCAAGGAGAAATATCCCAGAACCAAGCTATGAGAGTGACACTGAGACTCACTAGGTTTGTGAGTgagcgtgcatgtgtgtacatgtatgtgaggtgaggtgaggtagGGTTTCTGTCTGACTGAAGGCGAaatacagaaatgcagaaatgttcaCTGGGACTTAACAGGTCCTGGGCAAAACTAGATCACACTGTTAAATAGCAGTTTTTTTCTGCAACTATCTGAAGCCTGCACGTATTGCATCAGACTGATTAAAGTAATTGGTAGCTATTTTAGAGCCATTTCAGCAAAAATAGTCAAataatcaattaaataaaaataaatttaaaacatttatatttaatatagtaataatattagTTTGTGTTGTTAAGTACACTTCCATATGTATTTTAACTTCTAATATTGTAAACACAACAGTAATTATTCAGATTTAGCCTTTTAAATTGCAGAATGTTTCTTTCAGGATGGTAGCAGAATTCTCTGTTGAGAAATTTTGTACACCCtatgaaccttttttttctgtgaatggTCCAATATCATCTTATGAACTTACACTATAGCACTGAA
>XM_034304794.1
GTTGTCACAATGATGAAAAAGAAGAGCAGAATACTATATTATGGAACTCATGCATGATTGATTGTCCTTGCCAGTTCCCAGTCCTGGAGTAAGGCTAGTGTGTCGAGTGAAAGGGACGTGTGCATGTCAGAACTGGGGCAAGAGTGGAAGCCGTGGAGGCTTCCTtacacctccacctccatcacAGGAGGGGAGTCGGACCAGGAGCTGCAGACTTTTATCATGATGAGGAACCAGGTGGATAAAGACACTGAGgagtGGGAGAAGCTGAACTACGATATTCACGCACTGAGATATGCTCGTCGGGAGGTGTATGTGCGCTGGAAGAAGATCCTACTGCTGCTGGGTTACCAGAGGGAAGTGGATTCACTGTTAGCAGTGAATAAGCAGAGTGTAATGGCTGTAGGAGAGAATCTGGAGAGAGCCCGAGACCTGCTTTACACAGTGTGTGAGGAGTCCAGCCTCTTCCCCAGCGGCGTAGAACCCAACGACAGATTCCTCTTCGTCATGGATCGCTTGGTGTCTTTGGACAGCGCTGAGGACTTTGTTAGATTGGCCAAGGAGAAATATCCCAGAACCAAGCTATGAGAGTGACACTGAGACTCACTAGGTTTGTGAGTgagcgtgcatgtgtgtacatgtatgtgaggtgaggtgaggtagGGTTTCTGTCTGACTGAAGGCGAaatacagaaatgcagaaatgttcaCTGGGACTTAACAGGTCCTGGGCAAAACTAGATCACACTGTTAAATAGCAGTTTTTTTCTGCAACTATCTGAAGCCTGCACGTATTGCATCAGACTGATTAAAGTAATTGGTAGCTATTTTAGAGCCATTTCAGCAAAAATAGTCAAataatcaattaaataaaaataaatttaaaacatttatatttaatatagtaataatattagTTTGTGTTGTTAAGTACACTTCCATATGTATTTTAACTTCTAATATTGTAAACACAACAGTAATTATTCAGATTTAGCCTTTTAAATTGCAGAATGTTTCTTTCAGGATGGTAGCAGAATTCTCTGTTGAGAAATTTTGTACACCCtatgaaccttttttttctgtgaatggTCCAATATCATCTTATGAACTTACACTATAGCACTGAA

Function

NR:

description
PREDICTED: melanoregulin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026913223.2 True 1325 mRNA 0.42 5 20933518 20937574
XM_034304794.1 False 1127 mRNA 0.42 5 20933518 20937345

Neighbor

gene id symbol gene type direction distance location
fn1a LOC108266812,LOC108423980,LOC107688749,LOC107716781,LOC106582526 coding downstream 24979 20883784 ~ 20908539 (-)
pard3bb LOC108266848,LOC108423981 coding downstream 108144 20552393 ~ 20825374 (-)
nrp2b nrp2b,LOC108266767,LOC108423983,LOC107668386,LOC107716756,LOC107752901,LOC107688766 coding downstream 408746 20453330 ~ 20524772 (-)
ttll4 ttll4,LOC107593000,LOC107668375 coding downstream 549948 20370841 ~ 20383570 (-)
prkag3b prkag3,LOC108266105,LOC107738101 coding downstream 565090 20362156 ~ 20368428 (-)
cfap65 cfap65 coding upstream 418 20937992 ~ 20960443 (-)
mnx2a LOC108266177 coding upstream 23599 20961173 ~ 20964981 (-)
ptprna ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387 coding upstream 62644 21000218 ~ 21025738 (-)
tmem198a tmem198a,LOC108267037,LOC108423970,LOC107688741,LOC107716788,LOC107602903,LOC107721592,LOC107551083,LOC107668403 coding upstream 106851 21044425 ~ 21068353 (-)
ihha ihh,ihha coding upstream 155514 21093088 ~ 21100827 (-)
G86260 NA non-coding downstream 132968 20800289 ~ 20800550 (-)
G85978 NA non-coding downstream 423895 20483169 ~ 20509623 (-)
G85779 fam117b non-coding downstream 924364 20007273 ~ 20009154 (-)
G85778 bmpr2 non-coding downstream 926496 20003056 ~ 20007022 (-)
G85785 bmpr2 non-coding downstream 933086 19999151 ~ 20000432 (-)
LOC113547596 NA non-coding upstream 28326 20965900 ~ 20976155 (-)
G86350 NA non-coding upstream 89952 21027526 ~ 21027832 (-)
G86621 NA non-coding upstream 505322 21442896 ~ 21444084 (-)
G86713 NA non-coding upstream 672284 21609858 ~ 21610135 (-)
G86716 NA non-coding upstream 677414 21614988 ~ 21615996 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other downstream 510274 20394471 ~ 20423244 (-)
G85848 NA other downstream 695903 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 1347415 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 1439003 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 1965026 18913387 ~ 18968492 (-)
phgdh phgdh other upstream 198472 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 362298 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 520159 21457733 ~ 21459404 (-)
G86592 NA other upstream 527592 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 568862 21506436 ~ 21519959 (-)

Expression


Co-expression Network