ptprna (ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387)


Basic Information

Item Value
gene id ptprna
gene name ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21000218 ~ 21025738 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911960.2
TGGCGCACGACTCCCGAATCCTGATCCCGATCCGCGCCGCACATTCCAAGCTTTCTCCAGCATCtctgtgcgtgtttgtgtgagagagtgtgttttaCTGCCTAACCAGATCACGCTCGGTTTGGCATTAACCTGACTGGCTCTTGAGTCGTGCTTACTGCTCCAGCAAACCCCAGACCAAAATGCGGAATTAAACCGGCGATCTCCAAATTGCGCTCTGGTGGATCGTTTAGCGACGATGCGTCCGCGGTTATGGAGCGCCCTGTTGGGAATGACCGTGCTCTACCAGCTTGTCACAGCAGGCAAATACGGCTGTCTGTTTGAGAAGAGGCTGTGCTCCAGAGAGCAGTTCTGCtctgatgACAAGTTGTTTGGTCAGTGTCGGAAATCCAGGCATGAAGAGGTTCGATATCAAGTGTCTGTTCCTGTACTGCAGAGGCTGCAGGAGGTGCTCAAACAGCTGATGATGCAAGGATTCTCCTGGCAGGATGATATCACCCAGCACATCATAGCAAAGGAGCTGAGCCGGATTCCTCATGCTCGAGCCCAGACCTCTCAGCCAGCGCAGTCTGCACAGGCTGCTTCTAAAAAGACCTATTTGAGCTCTAAGTCAGAACCCAGCGTTGCGCAGAACTATTTGGATTATATGATTTTAGATCCTCGCCAGTCCTCATCACTCCGCATGCAAGCCTTACCATTAGACCCATACACATATCTGCAGGATGACATGTCACACTCTCTGCACCCTCATGCTGGTGCAGGCTACCAGCGTCCCTCGTCTCGCTCCGGCTCACAGCAGCACCAGcgagacagagacaggcagatTTTAGAGGAAGCCGTGTCGCTCTACCTCTCCTCTGCACAGCCTTCTTTTCACCATCGGGGGGCAGCAGGCCTCCCCGCTGCCCCTTATTACGAGGACTTGGACTTCCCACTGGATTATGGGGAGGACTACACCCTGCCGGAGCGACCCAGCTCACGCCAGCGGACCAACAAAAAGGTTCTACAGGACTACAGCTCTCTGCCAGAGCTGGACGatgatacagtagtgcagctgtccACAGTGTTGGAGAGACTTGGGGTGGATCCACAAGAGCTGAGCCCTCAACGCTTAAACAAAATCGCCCTCCTGCTTCAGCTCCTGCAGGCGGAGGAAACCGAGAACACAGATAAACATCCGGGAACAGTCACAGTGAAAGAAACGATTGTGGAGGGCAGTGACAGGGTGTCGCAGAAAGGTGCCAAACCTGTGTCTCCTGTAGTGACTCAGCCCACCACCCCAGGGCTCCAGCTAGCCTCTACACCGTCCCCCTCTGCCCCCGCTCCCGTCACTGTGGCTCAGGGGCCTGGAGCGACCACACATGGGCCAGTGAAGGAAGCAGAACTGGAAAAGGAAAAGACCCACACAAGCCTGAAACCAGGAGCTAAGGATGGCATAAATGTCAGAGAAGAGTATGGCTACATAGTCACAAATCAGAGTCCTCTGAGCCTGTACGATGGTGTAAAGCTATTAGAAACGCTGGCAGAAAGGATTCATCTCACAACAAGCAGCTTTATCAACATCAGcgtgGTAGGGCCTGCACTGACGTTCAGGATCAGACAGAACTCTCTGAACCTCAGCGCAGAGGACGTGGCCAATAAAGCTGTGGCTGAGAAGAATTTCTTGGAGGGAGAGACAGGTCTAAAGATCATTCAGACAGGGGTGGGAGAGAGAAGCGAGGGACGCGGGCTTCCCCAGGCCACGCGGATCAATGATGGCTCACGTGGTGTTGTCCTCACCGTGGTGGccatggcgtgtgtgtgtgtggtggtgttggttgCTTTAGCCATTGCTTGTCTGCGTCATCATGCTCGTCAGCTGGAGTCAGGGAAGCTGGGTCTCGGCCCCGAGGCTGGCACCGAGACCCATTTTGATTACCAGgaGCTCTGTCGGCAGCACATGGCAGCCAAGTCGTCGTTTAGCCGTCCAGAGCCAGGTGGACGGAGAGGGACGGATACGTCTCGAGTGAGCAGTGTGTCGTCTCAGTTCAGCGATGGGCCACAACACAGCCCCAGCTCTCACAGCAGCACGCCCTCATGGAGCGAAGAGCCCGCCCAGTCCAACATGGACATCTCTACCGGACACATGATACTGGCTTACATGGAGGACCATCTGAAGAATAAGGACCGTTTGCTAAAGGAGTGGGAGGCTCTGTGCTCGTACCAGGCTGAACCCAGCTCTGTTTCCGTCGCCCAGAGCGAGAGCAACCTGGAGAAGAACCGCAACCCTGAGTTTGTGCCCTATGACCATTCCCGGGTGAAGCTGAAGCCGGAGACGAACCCCGCTAGAGAGGACTACATCAATGCCAGCATTATAATAGACCATGACCCACGCATGCCTGCTTACATCGCTACTCAAGGCCCCCTGCCACACACCATTGCTGACTTCTGGCAGaTGGTATGGGAGAACGGCTGCACGGTGATCGTGATGATGACTGCTCTAGTAGAGGATGGAGAACAGCAATGTGAACGTTACTGGCCCGATGAAGGATCATCTCTGTACAACATCTATGAGGTCAACCTGGTGTCCGAGCACATCTGGTGTAAGGACTTCCTGGTGCGTAGTTTCTACCTGAAGAATGTGCAGACGCAGGAGACGCGCACACTGACCCAGTTCCACCTGCTCAGCTGGCCTGCGAATGGCATCCCAAGTTCCACACGACCCCTGCTGGATTTCCGCAGGAAAGTGAATAAGTGCTACCGAGGCCGATCCTGCCCAATCATTGTGCACTGCAGTGACGGGACTGGAAGAACTGGTACTTACATTCTCATTGACATGGTCCTGAACCGCATGGCGAAAGGTGTTAAAGAGATTGATATCGCTGCAACACTGGAGCACATTCGTGATCAGAGGCCCAGTATGGTGCGCACCAAGGACCAGTTTGAATTTGCCCTCACAGCTGTGGCAGAGGAAGTGAATGCCATCCTGAAAGCCCTCCCACAGTGAGCCATTCTGCAGTGTGGCACTCTGTTCATATGCATACTGccctctcctcacacacacactcacacaagccGTTACATAGACTGAACCAAGCTTGAGAAATTTCAGAATACATTTCTAACCATGGCCTTATTCGTTTAAAAAGCAGGGAAGGCTCCATGAATTTTGCGCCACTGTGTAAGCAGTATGATGGTCAGAGATTTATGTGTGCATCAGTCATTGCTGGGTAAAAGGTCAGATGAAACTTTATATAAGCTTCAGGTACTGATACAAATGGACCTAATGTCAGAATGGCAAATGTGAGCATATCTGTTTTTCTTGCCAGTGGATGTTGCCAATAAATACAATATCACTCCATCATCAGAACACATTTAGTGTCCTTTTCAGGCAAACATGgtgaatatatatgtatgcacaGCACTAAAACCTGAACACAGGAACACTCTGTTTGGAGTGTAATTTACTGCCTGGTTAGTGTTTCACAGCGCAAAGTGTAATACTCATCACTCATTGTGCTCGCTTCTCCTTGTGTTCTTTATGACTTGTGGATACCTTCTGTCGTGtgattattgtaaataattcaTTGATAAGTCTATTTGTTTATTCCTGTAGCAAATGTGTggaaaaactatataaaaaacagaaatatatgaCTATAATTTTTACATTGTTCTGAATTAAATGTGGTGTGGTGCAGCA
>XM_034304548.1
CCTGGCGCACGACTCCCGAATCCTGATCCCGATCCGCGCCGCACATTCCAAGCTTTCTCCAGCATCtctgtgcgtgtttgtgtgagagagtgtgttttaCTGCCTAACCAGATCACGCTCGGTTTGGCATTAACCTGACTGGCTCTTGAGTCGTGCTTACTGCTCCAGCAAACCCCAGACCAAAATGCGGAATTAAACCGGCGATCTCCAAATTGCGCTCTGGTGGATCGTTTAGCGACGATGCGTCCGCGGTTATGGAGCGCCCTGTTGGGAATGACCGTGCTCTACCAGCTTGTCACAGCAGGCAAATACGGCTGTCTGTTTGAGAAGAGGCTGTGCTCCAGAGAGCAGTTCTGCtctgatgACAAGTTGTTTGGTCAGTGTCGGAAATCCAGGCATGAAGAGGTTCGATATCAAGTGTCTGTTCCTGTACTGCAGAGGCTGCAGGAGGTGCTCAAACAGCTGATGATGCAAGGATTCTCCTGGCAGGATGATATCACCCAGCACATCATAGCAAAGGAGCTGAGCCGGATTCCTCATGCTCGAGCCCAGACCTCTCAGCCAGCGCAGTCTGCACAGGCTGCTTCTAAAAAGACCTATTTGAGCTCTAAGTCAGAACCCAGCGTTGCGCAGAACTATTTGGATTATATGATTTTAGATCCTCGCCAGTCCTCATCACTCCGCATGCAAGCCTTACCATTAGACCCATACACATATCTGCAGGATGACATGTCACACTCTCTGCACCCTCATGCTGGTGCAGGCTACCAGCGTCCCTCGTCTCGCTCCGGCTCACAGCAGCACCAGcgagacagagacaggcagatTTTAGAGGAAGCCGTGTCGCTCTACCTCTCCTCTGCACAGCCTTCTTTTCACCATCGGGGGGCAGCAGGCCTCCCCGCTGCCCCTTATTACGAGGACTTGGACTTCCCACTGGATTATGGGGAGGACTACACCCTGCCGGAGCGACCCAGCTCACGCCAGCGGACCAACAAAAAGGTTCTACAGGACTACAGCTCTCTGCCAGAGCTGGACGatgatacagtagtgcagctgtccACAGTGTTGGAGAGACTTGGGGTGGATCCACAAGAGCTGAGCCCTCAACGCTTAAACAAAATCGCCCTCCTGCTTCAGCTCCTGCAGGCGGAGGAAACCGAGAACACAGATAAACATCCGGGAACAGTCACAGTGAAAGAAACGATTGTGGAGGGCAGTGACAGGGTGTCGCAGAAAGGTGCCAAACCTGTGTCTCCTGTAGTGACTCAGCCCACCACCCCAGGGCTCCAGCTAGCCTCTACACCGTCCCCCTCTGCCCCCGCTCCCGTCACTGTGGCTCAGGGGCCTGGAGCGACCACACATGGGCCAGTGAAGGAAGCAGAACTGGAAAAGGAAAAGACCCACACAAGCCTGAAACCAGGAGCTAAGGATGGCATAAATGTCAGAGAAGAGTATGGCTACATAGTCACAAATCAGAGTCCTCTGAGCCTGTACGATGGTGTAAAGCTATTAGAAACGCTGGCAGAAAGGATTCATCTCACAACAAGCAGCTTTATCAACATCAGcgtgGTAGGGCCTGCACTGACGTTCAGGATCAGACAGAACTCTCTGAACCTCAGCGCAGAGGACGTGGCCAATAAAGCTGTGGCTGAGAAGAATTTCTTGGAGGGAGAGACAGGTCTAAAGATCATTCAGACAGGGGTGGGAGAGAGAAGCGAGGGACGCGGGCTTCCCCAGGCCACGCGGATCAATGATGGCTCACGTGGTGTTGTCCTCACCGTGGTGGccatggcgtgtgtgtgtgtggtggtgttggttgCTTTAGCCATTGCTTGTCTGCGTCATCATGCTCGTCAGCTGGAGTCAGGGAAGCTGGGTCTCGGCCCCGAGGCTGGCACCGAGACCCATTTTGATTACCAGgaGCTCTGTCGGCAGCACATGGCAGCCAAGTCGTCGTTTAGCCGTCCAGAGCCAGGTGGACGGAGAGGGACGGATACGTCTCGAGTGAGCAGTGTGTCGTCTCAGTTCAGCGATGGGCCACAACACAGCCCCAGCTCTCACAGCAGCACGCCCTCATGGAGCGAAGAGCCCGCCCAGTCCAACATGGACATCTCTACCGGACACATGATACTGGCTTACATGGAGGACCATCTGAAGAATAAGGACCGTTTGCTAAAGGAGTGGGAGGCTCTGTGCTCGTACCAGGCTGAACCCAGCTCTGTTTCCGTCGCCCAGAGCGAGAGCAACCTGGAGAAGAACCGCAACCCTGAGTTTGTGCCCTATGACCATTCCCGGGTGAAGCTGAAGCCGGAGACGAACCCCGCTAGAGAGGACTACATCAATGCCAGCATTATAATAGACCATGACCCACGCATGCCTGCTTACATCGCTACTCAAGGCCCCCTGCCACACACCATTGCTGACTTCTGGCAGaTGGTATGGGAGAACGGCTGCACGGTGATCGTGATGATGACTGCTCTAGTAGAGGATGGAGAACAGCAATGTGAACGTTACTGGCCCGATGAAGGATCATCTCTGTACAACATCTATGAGCAAAGATCATATACAGCACCTCTAGCTTTGCACAGATGCTTGTGTATGGCAGCACCAGATGGTTTTCCTAGTTCTTACTGGACGTCCCTGTGACTCTCAGGTCAACCTGGTGTCCGAG

Function

symbol description
ptprn Enables spectrin binding activity and ubiquitin-like protein ligase binding activity. Involved in several processes, including dense core granule maturation; insulin secretion; and positive regulation of type B pancreatic cell proliferation. Located in nucleus. Implicated in type 1 diabetes mellitus.

NR:

description
LOW QUALITY PROTEIN: receptor-type tyrosine-protein phosphatase-like N

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K07817 PTPRN; receptor-type tyrosine-protein phosphatase N

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911960.2 True 3682 mRNA 0.51 23 21000218 21025736
XM_034304548.1 False 2674 mRNA 0.54 19 21002910 21025738

Neighbor

gene id symbol gene type direction distance location
mnx2a LOC108266177 coding downstream 35237 20961173 ~ 20964981 (-)
cfap65 cfap65 coding downstream 39775 20937992 ~ 20960443 (-)
LOC113526297 LOC108267042 coding downstream 62644 20933518 ~ 20937574 (-)
fn1a LOC108266812,LOC108423980,LOC107688749,LOC107716781,LOC106582526 coding downstream 91679 20883784 ~ 20908539 (-)
pard3bb LOC108266848,LOC108423981 coding downstream 174844 20552393 ~ 20825374 (-)
tmem198a tmem198a,LOC108267037,LOC108423970,LOC107688741,LOC107716788,LOC107602903,LOC107721592,LOC107551083,LOC107668403 coding upstream 18687 21044425 ~ 21068353 (-)
ihha ihh,ihha coding upstream 67350 21093088 ~ 21100827 (-)
klhl23 klhl23,LOC108423963 coding upstream 105606 21131344 ~ 21135866 (-)
klhl41a klhl41,klhl41a,LOC108423959 coding upstream 146130 21171868 ~ 21176222 (-)
bbs5 bbs5 coding upstream 151141 21176879 ~ 21183934 (-)
LOC113547596 NA non-coding downstream 24063 20965900 ~ 20976155 (-)
G86260 NA non-coding downstream 199668 20800289 ~ 20800550 (-)
G85978 NA non-coding downstream 490595 20483169 ~ 20509623 (-)
G85779 fam117b non-coding downstream 991064 20007273 ~ 20009154 (-)
G85778 bmpr2 non-coding downstream 993196 20003056 ~ 20007022 (-)
G86350 NA non-coding upstream 1788 21027526 ~ 21027832 (-)
G86621 NA non-coding upstream 417158 21442896 ~ 21444084 (-)
G86713 NA non-coding upstream 584120 21609858 ~ 21610135 (-)
G86716 NA non-coding upstream 589250 21614988 ~ 21615996 (-)
G86719 NA non-coding upstream 595912 21621650 ~ 21621874 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other downstream 576974 20394471 ~ 20423244 (-)
G85848 NA other downstream 762603 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 1414115 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 1505703 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 2031726 18913387 ~ 18968492 (-)
phgdh phgdh other upstream 110308 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 274134 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 431995 21457733 ~ 21459404 (-)
G86592 NA other upstream 439428 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 480698 21506436 ~ 21519959 (-)

Expression


Co-expression Network