klhl23 (klhl23,LOC108423963)


Basic Information

Item Value
gene id klhl23
gene name klhl23,LOC108423963
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21131344 ~ 21135866 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912935.2
GCAAACTTGTGTGCAGAATAATGCACTACTTTTGATTTCATCGTCTTTCTCAGCACTTAAAAAAAGGCTACATTTATGCATTGAGATTAGATTCGATCCTGCTATGTATGGAAGCAGAGGAATGGTGTAGGCTATAGGTTTCTTTTTAATGGCGTTATTTAGACTGTGTTCAATTTAGGAGCTGACGTTCATCTACAAGATAGTGTAGAGCCGTGTAACAGCCAGCTGGCCTCTCCAACTATACACAGATACCAAAATAGGAGTCTAAATGGAGGGGCCATCtgtcttctccgtcagagagagagagcgagagagagagatgcctgAGGAGCTCAGTCCATGCATCACATCATGCTCTTTAAATCTCTTTTAATCTAAGAAGACGATCCGTGTCAATCTATTACTCCACTTCAGTTACTTCTTCTAAATCATGTCATCAAAGGATGGAGAAAGTTACATATATGAATTTTGCGATGAAGATCATCCGTCAGAAACCCTGGGAGCTCTTTGGGAGTTCTACGCTTGTGGCCTGTTCGCTGACATCACGCTCCAGTGTAGTACAGGACAGATGTTTCACTGTCACAAGGCCTTGCTGTCGGCCCGCAGCGCCTACTTTAAAGTCATGTTCACTTCAGACATGAGGGAACGCTCAAATGTCCTCATTAATCTGCCTGGCATAGATGGAGAGATTCTGAGCGCTCTGGTCAACTATGTTTATACGTCCAAAGTGAACATCACACAAGCTAACGTGCAAAGCCTCCTGGAAGCAGCTGACCTCCTTCAGTTCGGCTCAGTAAAGGTGGCCTGTGAGGAGTTCATGATGCGGTTTTTGGATGTTGATAACTGCCTTGGGATGCATGCTTTTGCTGAGCTTCATGTCTGCCCCGTGCTGAAGCGCGAGGCACTGAGGATTATGCTTAGCAGATTTGAAGAACTGATATGTCAAGAGGAGTTTTGGGGACTTGACTTCAAAAAGCTTGTCACAATTCTGTCTGCTGAGAACGTCAATGTGTGGAAGGAGGAGACGCTTTTAGAAGCAGTTGTGAAGTGGGTGACCTTTGACATAGATTCTCGGAAAGAAAACATTCTGGATCTACTGCACTGCATTCAGCTCGAGGTGGATGATGTGTATCTCAGAACAGCTTTAGACTTGCACAAACAATGTAGTGAACACAAGATACGATCTATCATCAGTCAGTCTGTGAAATCTAGTGGAATTTATGCAACTAGTAAGAATCTCACATCAAAAATGTATATCATAGGTGGatattattggcaccccttgtCGGAAATTCACATATGGGACCCCATTTGCAACGCGTGGATCCAAGGGAAGGACATGCCTGACTACACAAGAGAGAGTTATAGTGTTTCACTTCTGGGTTCTAACATCTACGTGACAGGAGGATACAGGACAGAGACAGTGGACGCACTGGATACAGTTTGGATTTACAACGTCGACTCAGATGAGTGGACAGAGGGATGCTCTATGATCACTGCTAGATATTACCACTGCTCTGTGCCCTTACATGGATGTATATACGTCATAGGCGGGTACACAGGGGGTGCGCCAACTCAGGAGACTGAATTCTATGAtccattaaaaaagaaatggttTCCTGTGGCAGATATGATACAAGGTGTTGGAAACGCTACTGCATGCGTGTTGCAAGACAGAATCTACGTGACCGGAGGTCATTATGGATACAGAGGGAGCTGCACCTTTGAGAAAATACAAACTTACAGAGCCGACATCAATGAGTGGAGCATTACAACAATAAGTCCCCATCCAGAGTATGGACTTTGCTCAGTGTCACTCAACAACAAGCTCTACTTGGTGGGTGGTCAGAGCACCATCACAGACTGCTACGACCCGGAGAGGGATGAATGGACACAGATAGCCAtgatgaaggagagaaggaTGGAGTGTGGAGCCACAGTAATAAATGGGTGCATCTATGTGACTGGTGGCTATTCCTACTCCAAGGGCACGTACTTGGAGACTATAGAGCGATACGACCCTGAACTGGACTGCTGGGAGATAGTAGGGAACCTACCTAGTGCGACTCGCTCACACGGCTGTGTTGGTGTGTTCTGTCTATAGAGAGTTATTGTTCATGTCCTTATAcctgtgtgtattatatttgtatttatatacagaatCTTATTTCCAACATGCATGATTGGGAGTCATGTGTTTCTAGAGTTTTTACTAATAGTGTTA

Function

symbol description
klhl23 Orthologous to human KLHL23 (kelch like family member 23).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K10460 KLHL23; kelch-like protein 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912935.2 True 2224 mRNA 0.45 4 21131344 21135866

Neighbor

gene id symbol gene type direction distance location
ihha ihh,ihha coding downstream 30517 21093088 ~ 21100827 (-)
tmem198a tmem198a,LOC108267037,LOC108423970,LOC107688741,LOC107716788,LOC107602903,LOC107721592,LOC107551083,LOC107668403 coding downstream 62991 21044425 ~ 21068353 (-)
ptprna ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387 coding downstream 105606 21000218 ~ 21025738 (-)
mnx2a LOC108266177 coding downstream 166363 20961173 ~ 20964981 (-)
cfap65 cfap65 coding downstream 170901 20937992 ~ 20960443 (-)
klhl41a klhl41,klhl41a,LOC108423959 coding upstream 36002 21171868 ~ 21176222 (-)
bbs5 bbs5 coding upstream 41013 21176879 ~ 21183934 (-)
col28a2a LOC108266197,LOC108423871 coding upstream 50045 21185911 ~ 21205991 (-)
zgc:172182 ccdc89 coding upstream 75424 21211290 ~ 21216144 (-)
LOC117597436 NA coding upstream 205718 21341584 ~ 21344395 (-)
G86350 NA non-coding downstream 103512 21027526 ~ 21027832 (-)
LOC113547596 NA non-coding downstream 155189 20965900 ~ 20976155 (-)
G86260 NA non-coding downstream 330794 20800289 ~ 20800550 (-)
G85978 NA non-coding downstream 621721 20483169 ~ 20509623 (-)
G85779 fam117b non-coding downstream 1122190 20007273 ~ 20009154 (-)
G86621 NA non-coding upstream 307030 21442896 ~ 21444084 (-)
G86713 NA non-coding upstream 473992 21609858 ~ 21610135 (-)
G86716 NA non-coding upstream 479122 21614988 ~ 21615996 (-)
G86719 NA non-coding upstream 485784 21621650 ~ 21621874 (-)
G86723 NA non-coding upstream 498282 21634148 ~ 21634354 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other downstream 708100 20394471 ~ 20423244 (-)
G85848 NA other downstream 893729 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 1545241 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 1636829 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 2162852 18913387 ~ 18968492 (-)
phgdh phgdh other upstream 180 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 164006 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 321867 21457733 ~ 21459404 (-)
G86592 NA other upstream 329300 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 370570 21506436 ~ 21519959 (-)

Expression


Co-expression Network