mnx2a (LOC108266177)


Basic Information

Item Value
gene id mnx2a
gene name LOC108266177
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 20961173 ~ 20964981 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912797.2
GCGAGATCGCTTACATCCGGACGGATTAGGAAAGAGGAAGGACGTCGTGGTCCTGACAGAAACCAGCGCCGAcgtgtttgtctgtttatagccTTAACACTTATTTCAGCTTCGACATGATTAGATGAGCAGTTCTTCcgagcaaaataaataaatgaataaataaaataaatattattaaaacataagcGTATAAGTTAGAAGTAATAAAACAAGCCCTGAACGGAAGCGCGCAGGTTTAAGGCAGCAGGATTGTCATGGATAAGTCGAAGAACTTTCGGATCGATGCTCTGCTGGCGGGAGAGTCCCAGCGGAGGAGAAGTCGGGACTCTGATATACTCGATGTTGAAGCCACTCTGTGCAAGCGATCAGACAGCTCTCCGATCCGGAGCAGCTCCAGTGTGCTCCAGCAGCAGGCAGGAATCGTGCCCAAACCCGGCCTGCTGTCCATCCCTCACCCGGGACTAAGCGCGTTATCTCAGGGCTCGATCGCAGGGATGTACCCGGGCCCGGTGTGCTCTCTGAGTGCGCTGGGAGCGCAGCATGCCGCGTTCCCCTATCCCGCCTTCACTCCGCCGCATCCCGAGCAGCTGAAGGCCGCCGCCGTGGCGGGACATTTCCCCTTCGAGCAGTGGATCCGCGCCGGCATCATGGTGCCGCGACTCGCCGACTTTAACGgCTCTCCTCAGTCAGGCCTGATGGGAAAATGCCGTCGACCTCGAACTGCTTTCACTAGTCAGCAACTACTGGAGCTGGAAAACCAGTTCAAACTGAATAAATACCTGTCGCGACCCAAACGCTTTGAAGTGGCCACTTCGCTAATGCTGACTGAAACGCAAGTGAAAATCTGGTTCCAAAACCGACGGATGAAATGGAAGCGCAGCCGAAAAGCCAAAGAGCAGGCAGCACAGCTGGAGGCTGATGGCAATCAGCAGGCGAAACGCTCCAGCAAACCCGGAGACCCTCGCCGCTGCAGCACACAGGACGACGATGAGGAGCTGGAagctgaggaggaagaggacgaAGATGAAGGCTTCGGTGGTGCTCTAAACGGCAGCGTGGGCCTGCCTCACTCCTCAGACTTTCTCCAGCACAGCTCCGAGTTGAGCTACAGCTCTCATAGCTCTTACTCAGACGACGACCTGGAAGAGATTGGAGCTGACCGGAAGATTGGAGTAGGGCTATGAAGATGCAGTGTAATTATGAGTTATTTACCCATTGTGTAGTCCAACAGCTTGCTGCATCCATAGCCTTCATCAGAGACTTTGTACTTACAAAGACTGAAGCCATGCACCAAAATCTCTATCTCTTATTTATCTATGTGGCAGCCTTTAACTTATAAACTGCTGTCTTGTCCCAAGTAGGAATGTTTCTCTctgtaaaaatgtctttgtccTCTGTGTTCGGGTGAGTATTTTGGGATATGCAACCTGTGTTTGAGTAGTAGAACCAAAATTTCTACTGCATGCAATCCAGATGCTTACTTTTGTACATTGATCTGTACATACACGTGAACAAAAACATGTGTAGCTATGAACTACACTGTGCTCAATGTGAACGGAGGGTTACTGTGTGATGCAAAGCTTTTGTTACACAGCATTTTTCTCAGAATCCGTTGACTGAATAACACAGCAGAACTTGTAAATCCTCACCAATTATAGAGAAACAGGAGCAAAAAGTGGAGCGATGTGTTATTTAGTCATTAGTCTTTGTCATGTTTGTTATTGGTGGTGTTGTCCTTAATGGTATTTAAGTATTATAGATTATATCTAATTTATTCATGGTAAAATGTACACAGTGAAAATTCACAGCAAAGAAAATGTCTCTgttaaattaaaagcaaaaaaaataataaactgtaaaaatta

Function

NR:

description
PREDICTED: motor neuron and pancreas homeobox protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912797.2 True 1868 mRNA 0.47 3 20961173 20964981

Neighbor

gene id symbol gene type direction distance location
cfap65 cfap65 coding downstream 730 20937992 ~ 20960443 (-)
LOC113526297 LOC108267042 coding downstream 23599 20933518 ~ 20937574 (-)
fn1a LOC108266812,LOC108423980,LOC107688749,LOC107716781,LOC106582526 coding downstream 52634 20883784 ~ 20908539 (-)
pard3bb LOC108266848,LOC108423981 coding downstream 135799 20552393 ~ 20825374 (-)
nrp2b nrp2b,LOC108266767,LOC108423983,LOC107668386,LOC107716756,LOC107752901,LOC107688766 coding downstream 436401 20453330 ~ 20524772 (-)
ptprna ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387 coding upstream 35237 21000218 ~ 21025738 (-)
tmem198a tmem198a,LOC108267037,LOC108423970,LOC107688741,LOC107716788,LOC107602903,LOC107721592,LOC107551083,LOC107668403 coding upstream 79444 21044425 ~ 21068353 (-)
ihha ihh,ihha coding upstream 128107 21093088 ~ 21100827 (-)
klhl23 klhl23,LOC108423963 coding upstream 166363 21131344 ~ 21135866 (-)
klhl41a klhl41,klhl41a,LOC108423959 coding upstream 206887 21171868 ~ 21176222 (-)
G86260 NA non-coding downstream 160623 20800289 ~ 20800550 (-)
G85978 NA non-coding downstream 451550 20483169 ~ 20509623 (-)
G85779 fam117b non-coding downstream 952019 20007273 ~ 20009154 (-)
G85778 bmpr2 non-coding downstream 954151 20003056 ~ 20007022 (-)
G85785 bmpr2 non-coding downstream 960741 19999151 ~ 20000432 (-)
LOC113547596 NA non-coding upstream 919 20965900 ~ 20976155 (-)
G86350 NA non-coding upstream 62545 21027526 ~ 21027832 (-)
G86621 NA non-coding upstream 477915 21442896 ~ 21444084 (-)
G86713 NA non-coding upstream 644877 21609858 ~ 21610135 (-)
G86716 NA non-coding upstream 650007 21614988 ~ 21615996 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other downstream 537929 20394471 ~ 20423244 (-)
G85848 NA other downstream 723558 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 1375070 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 1466658 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 1992681 18913387 ~ 18968492 (-)
phgdh phgdh other upstream 171065 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 334891 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 492752 21457733 ~ 21459404 (-)
G86592 NA other upstream 500185 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 541455 21506436 ~ 21519959 (-)

Expression


Co-expression Network