bbs5 (bbs5)


Basic Information

Item Value
gene id bbs5
gene name bbs5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21176879 ~ 21183934 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912938.2
ACCACGGTGACGCAGAGACGCTGAGCTTCGATTCCTCTTATCCGCCAGCTAGCGAGTGTCTTGAGGCAAAAACCCCGGATAGAGACGTGACCTGGTCAGCTGTGTGTCTGCGGCGGGTTACAGGCGGATCATGGCGGGAGTGTTAGATGCGCTTTGGGAGGACAGAGATGTTCGCTTCGACATCACACCACAACAGATGAAAACCAGGCCGGGTGAGGTGCTCATCGACTGCCTGGATTCAATCGAAGACACTAAAGGAAATAACGGTGATAGAGGAAGACTCCTGGTGACCAATTTAAGAATCGTCTGGCATTCTGTCGCCTTGCCGAGGGTTAACTTATCTGTGGGATACAATTCTGTCATAAACATCACCACAAGAACAGCAAATTCAAAATTGAGGGGGCAGACTGAAGCGCTCTACATCTTAACTAAATCTAATAACACAAGATTTGAGTTTATCTTCACTAATGTCATTCCTGGAAGTCCGAGACTCTTCACTTCTGTCATTGCTGTACACAGAGCTTATGAGACCTCTAAAATGTACCGAGATCTCAAACTAAGAGCAGCTTTGATTCAGAATAAGCAGCTGAGATTACTGCCACGCGAACAAGTGTACGACAAAATCAACGGCGTTTGGAATTTATCCAGTGATCAGGGTAACCTGGGCACTTTCTTCATTACTAACGTGAGGATAGTGTGGCACGCCAACATGAACGAAAGCTTCAATGTCAGCATTCCTTACTTGCAAATACGCTCTATAAGGATTAGAGACTCCAAGTTTGGACTTGCGCTTGTGATCGAGAGCTCTCAGCAGACAGGTGGATATGTTCTGGGTTTTAAGATCGATCCACTGGACAAGTTACAGGATGCAGTGAAGGAAATAAACTCTCTTCACAAAGTCTATTCTGCAAACCCAATCTTTGGTGTGGAATACGAGATGGAGGAAAAGCCACAGCCGCTGGAGGAGCTAACAGTAGAGCAGCCTCCTGATGATGTCGAGATCGAGCCAGATGAACAGACTGATGCTTTTACAGCGTACTTTGCTGATGGCAACAAGcaaCAAGACCGGGAGCCAGTGTTCTCTGAAGAGCTAGGTTTAGCGGTGGAGAAGTTAAAAGATGGCTTCACGCTGCAAGGACTTTGGGAGGTCATGGGTTGAAAAGATGAAGTTGTACTAAATAGTAAAGATCTTATTAATCATGAGAGTATTTAAAGGTTAAATGGAAAAGTTTTGTGGTTTGAATTCttgttgttttaatgtttacagACATTTGTATCTAATATctagttgtatttatttttttctagacttaatttatatattgtgtatataatatgaaaatagatgGATTACTAACAAGACCAATGTATAGTTCATTTTCTTAGGATTGAATCATGTCAGTTTAAGgcagaaataaatggatgaGATATTTGTATGCTATCACCTTTATAGTTGTactttgtcaaaaaaaaagatatttttgctACTAGAGCGTAATAAACATACCAAAACATCA
>XM_034304411.1
ACCACGGTGACGCAGAGACGCTGAGCTTCGATTCCTCTTATCCGCCAGCTAGCGAGTGTCTTGAGGCAAAAACCCCGGATAGAGACGTGACCTGGTCAGCTGTGTGTCTGCGGCGGGTTACAGGCGGATCATGGCGGGAGTGTTAGATGCGCTTTGGGAGGACAGAGATGTTCGCTTCGACATCACACCACAACAGATGAAAACCAGGCCGGGTGAGGTGCTCATCGACTGCCTGGATTCAATCGAAGACACTAAAGGAAATAACGGTGATAGAGGAAGACTCCTGGTGACCAATTTAAGAATCGTCTGGCATTCTGTCGCCTTGCCGAGGGTTAACTTATCTGTGGGATACAATTCTGTCATAAACATCACCACAAGAACAGCAAATTCAAAATTGAGGGGGCAGACTGAAGCGCTCTACATCTTAACTAAATCTAATAACACAAGATTTGAGTTTATCTTCACTAATGTCATTCCTGGAAGTCCGAGACTCTTCACTTCTGTCATTGCTGTACACAGAGCTTATGAGACCTCTAAAATGTACCGAGATCTCAAACTAAGAGCAGCTTTGATTCAGAATAAGCAGCTGAGATTACTGCCACGCGAACAAGTGTACGACAAAATCAACGGCGTTTGGAATTTATCCAGTGATCAGGGTAACCTGGGCACTTTCTTCATTACTAACGTGAGGATAGTGTGGCACGCCAACATGAACGAAAGCTTCAATGTCAGCATTCCTTACTTGCAAATACGCTCTATAAGGATTAGAGACTCCAAGTTTGGACTTGCGCTTGTGATCGAGAGCTCTCAGCAGACAGGTGGATATGTTCTGGGTTTTAAGATCGATCCACTGGACAAGTTACAGGATGCAGTGAAGGAAATAAACTCTCTTCACAAAGTCTATTCTGCAAACCCAATCTTTGGTGTGGAATACGAGATGGAGGAAAAGCCACAGCCGCTGGAGGAGCTAACAGTAGAGCAGCCTCCTGATGATGTCGAGATCGAGCCAGATGAACAGACTGATGCTTTTACAcaaCAAGACCGGGAGCCAGTGTTCTCTGAAGAGCTAGGTTTAGCGGTGGAGAAGTTAAAAGATGGCTTCACGCTGCAAGGACTTTGGGAGGTCATGGGTTGAAAAGATGAAGTTGTACTAAATAGTAAAGATCTTATTAATCATGAGAGTATTTAAAGGTTAAATGGAAAAGTTTTGTGGTTTGAATTCttgttgttttaatgtttacagACATTTGTATCTAATATctagttgtatttatttttttctagacttaatttatatattgtgtatataatatgaaaatagatgGATTACTAACAAGACCAATGTATAGTTCATTTTCTTAGGATTGAATCATGTCAGTTTAAGgcagaaataaatggatgaGATATTTGTATGCTATCACCTTTATAGTTGTactttgtcaaaaaaaaagatatttttgctACTAGAGCGTAATAAACATACCAAAACATCA

Function

symbol description
bbs5 Predicted to enable phosphatidylinositol-3-phosphate binding activity. Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ morphogenesis; and establishment of pigment granule localization. Predicted to be located in ciliary membrane; cytoplasm; and cytoskeleton. Predicted to be part of BBSome. Predicted to be active in ciliary basal body. Is expressed in forebrain; margin; retina; and tail bud. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome and Bardet-Biedl syndrome 5. Orthologous to human BBS5 (Bardet-Biedl syndrome 5).

NR:

description
Bardet-Biedl syndrome 5 protein isoform X2

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0001947 heart looping biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0060170 ciliary membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16748 BBS5; Bardet-Biedl syndrome 5 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912938.2 True 1517 mRNA 0.42 12 21176879 21183934
XM_034304411.1 False 1493 mRNA 0.42 11 21176879 21183934

Neighbor

gene id symbol gene type direction distance location
klhl41a klhl41,klhl41a,LOC108423959 coding downstream 657 21171868 ~ 21176222 (-)
klhl23 klhl23,LOC108423963 coding downstream 41013 21131344 ~ 21135866 (-)
ihha ihh,ihha coding downstream 76052 21093088 ~ 21100827 (-)
tmem198a tmem198a,LOC108267037,LOC108423970,LOC107688741,LOC107716788,LOC107602903,LOC107721592,LOC107551083,LOC107668403 coding downstream 108526 21044425 ~ 21068353 (-)
ptprna ptprn,LOC108423971,LOC107688743,LOC107551086,LOC107716786,LOC107602900,LOC107668387 coding downstream 151141 21000218 ~ 21025738 (-)
col28a2a LOC108266197,LOC108423871 coding upstream 1977 21185911 ~ 21205991 (-)
zgc:172182 ccdc89 coding upstream 27356 21211290 ~ 21216144 (-)
LOC117597436 NA coding upstream 157650 21341584 ~ 21344395 (-)
heg1 heg1 coding upstream 167435 21351369 ~ 21362958 (-)
slc12a8 slc12a8 coding upstream 179564 21363498 ~ 21383099 (-)
G86350 NA non-coding downstream 149047 21027526 ~ 21027832 (-)
LOC113547596 NA non-coding downstream 200724 20965900 ~ 20976155 (-)
G86260 NA non-coding downstream 376329 20800289 ~ 20800550 (-)
G85978 NA non-coding downstream 667256 20483169 ~ 20509623 (-)
G85779 fam117b non-coding downstream 1167725 20007273 ~ 20009154 (-)
G86621 NA non-coding upstream 258962 21442896 ~ 21444084 (-)
G86713 NA non-coding upstream 425924 21609858 ~ 21610135 (-)
G86716 NA non-coding upstream 431054 21614988 ~ 21615996 (-)
G86719 NA non-coding upstream 437716 21621650 ~ 21621874 (-)
G86723 NA non-coding upstream 450214 21634148 ~ 21634354 (-)
phgdh phgdh other downstream 32258 21136046 ~ 21144621 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other downstream 753635 20394471 ~ 20423244 (-)
G85848 NA other downstream 939264 20226728 ~ 20237615 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 1590776 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 1682364 19443091 ~ 19494515 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 115938 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 273799 21457733 ~ 21459404 (-)
G86592 NA other upstream 281232 21465166 ~ 21469181 (-)
LOC113526134 LOC108266489,LOC108266490,LOC108261972,LOC108266491 other upstream 322502 21506436 ~ 21519959 (-)
G86715 NA other upstream 429702 21613636 ~ 21614511 (-)

Expression


Co-expression Network