evx2 (evx2,LOC107657379,LOC107671304)


Basic Information

Item Value
gene id evx2
gene name evx2,LOC107657379,LOC107671304
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17695290 ~ 17699980 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU100221
GGGCACGGACTTCACATGCACGGCAAGCGCGCCCAGGTCCGAAAGCGGATTTCTACCCTATTCGGCTGCGGTACTGAGCAAAACCGCCGTGCCCTCGCCAGACCAGAGAGAGGAAAGCGCCCTCAATAGATAACTTGACACTTGAACATGAAACGAAAGCTACTTTTGATTTTAATCAACATCGTGTTGTTAGCGCATTCAAAGTACTAAGGACATTTTTCCCAAGCCATTCCAAGCAGAACCCATTATCCAAGaccataaaatataaacaattattaaaatgataacatCCGGAACTAGCGCCagatgcaaaaaagaaagattcGGCATCGAGAAAACAATATGGCTAAATAATAGCAGATGTATGATCCAgtttccattattttttttcctaatttttttttttttttttcaattttcgtCTTCAAATATTATGACTTAACACACACCTATTTCATGCtctaaagagaaaaatatggtgCATGTGCAACTTTTAGTGTCTACTGAGGTAccaggatgaggatgatgacgATGCCGTTCAGGGTCTCCCTTAATTCGATGGAGCTATAGGCGCTGAGACTCTACACTGCTTCCACAGTGTCAATTCTGCTGTTAATAATGTGCAGATTATGACGAAAATTGCCAATCATGCACCTTGATGGAGCTCCTTTGAAAGAGAAAATGTAAGGAAGTTCCCTGTTCTGAGACCCGATGTCACATCATAACAACCCGCTGTGGGAAGTCATTAGACGAGGCAGATAAAGGACCTTGTGCTTCACACATTGTTATTGGTGCATATTGTACAGTAACAAACGTGGCATTCGTTatctgaagaaataaaaaaaaaaaaaaaaaaaaaaaagaaagaaagaaaaaaaaaaaaaactcccctTCCGCTGAGTCCTATTTCCAGTCTCCTTATTGGAGCTTTAGTCGTCGTGGGTAGAATTTCCTCTCAGCTGTGTTCCGCTGATGCGAGCAGCCTCATTAAATACGAACCGATATTTCCATAATGCTCCCAACAGAGACTCTTCACTCACATTGTAACGGGATTATCCGCACAAGCCCAAACTTTAGACAAATTGCTCATGCATTTCTGTCTGCATGCATATTTTTTGTCACCTAGATAACATTTTGCCCGTTAGACAACCGCATTTTAACAAACGCAAAACAGCACTTGTATAGCCAGTTACGAATGGTGAGATATTTTGTCATAACATGCATAGTCTAGTTCAGAGAGAATGAAACCAAAACACCGACAGCTATGTGAAAAGAACTTTcagcgtttatttatttatttatttatttcaatgagTTAGACATCTATTTAATTCAAGTGACTGGCTGAATGTTTGAGTTTGTCTTAGGTGCTCTAACAGTTCTACACACATGTAATGTCGATACcagagtttaaaataaatatcaagaCATCCAAGACAGAACACAGAAATGCAGGACATATACCAAATGGTCATTGTATATAATGCATATTACATTGCTGATAAAGTTTCGAATGGTAAAAGGGTTTTATACATTAGTAGGGGATGCGAAGGGATGGTTCTCGCTATAGAAACAGTTTGTTCAATAAAtgggagtgaaaaaaaaaatcctgtgtttTGCCCTTCTCCCCAGGATCGCTGTGATTCATGACTCTTTAAATTACGtttctgtattttaaatattaccaACTGtatgatttttcatattttcacttgagaaatatgtgcaatataaaatgtaaattatgttatttattgatggtgtttgttcttggggaaataaatatttaaaaatcaa
>XM_026912926.2
CTCATTTTATTAATCAGACTGTCAATTTCACCCCAGAGGCCAAACCCAGGAGCCATCTAAAGCAGACGCAGATCAGCGACGGGACAGCAGCTCCTCTCCTCACTTCTCCCCTCTCCCTCCACCTGGATATGAGGCTTTGAGCGAGCTCAGCCCGACTACATCATTCCTCTGACAGTCCTGCTCctatttatttgcttataaaCCTGTTACAATAAATGATCATTCGAGAAGCGTCACGCGCACCTTTAACGACGAAACCGCGAACCactttttttgataaatgacaTTTCGGACCGGATAGGATGCACGGGTCATTTTGAGCAGTCATTCGTTGCCCGCACTGGCAttcgtctgttttttttttctttctttcgtcTTGCCCATAAAGGTGTTATATTATTTAGTGCCAGTAGCAGAGCTGACGGCGGATTAGCTACGCCACAAATTCATCGGAGTACCAGCGGCGCCGGGacttgggcttttttttttcctacgcAACTTCATGATGGAGAGGATAAGAAAAGAGATGATTCTGATGGAAAGGGGGCTGCACAGTCCCGTGTCAGGCAAGAGGCTCCCAAACCTCTCTGAGTCGAACGGAAACGCGGTGCTTGAGGCCCTCGAAAATTCTCAGCATGCGGGGCGACTGAGCCCGAGAATCACTTCCGCTTCGCTACACGCTAGCCTGGGCGACGTACCCAGCAAAGGCAAATTCGAAATAGACAGCTTATTCGGAAACCACCACGCCAGCGACAACAGTTCATCGGCGGAAATCTCGTCCTCGGAAAACAGGAAGAAATCAAGTCTGTATCCTGAAGTTTCTACCGACTCCGAAATGAATAGCGATGTGGAAGTGGGCTGCCCATCTCATCGCTCCCCAAGCAGTGTCAGCCAACACAAGGAAAACAATAATAAAGGTTTCTCAGACAGTAATTCGGGGACCTCGAGCTCGAGTTCTTCGTCTGTCTCCAATCATAACGGAAACTCCATCGGCAGCTCGACCAACTCAAACACAGACCAGGTGCGGCGATATCGGACTGCTTTCACCAGAGAACAAATCGGGAGACTGGAAAAAGAATTTTACAGGGAAAACTACGTTTCAAGACCCAGGAGATGTGAGCTAGCTGCAGCGTTAAACCTGCCTGAAACAACTATAAAGgtgtggttCCAGAACCGGCGAATGAAGGACAAGAGGCAGCGCCTGGCCATGTCCTGGCCACATCCGGCCGATCCCAGCTTCTACACTTACATGATGACGCACGCAGCCGCCACCGGAAGTCTGCCGTACCCGTTCCATTCTCACATGCCCCTACACTACTACCCGCACGTGGGCGTCACGGCCGCGGCGGCGGCGGCTGCGGCCTCGGGGGCCGCATCATCACCATTCGCCACCTCTATCCGACCCCTTGACACCTTCCGAGCGCTCTCCCATCCGTATTCGCGTCCGGAGCTGCTCTGCAGCTTTCGGCACCCCGGACTGTACCAGTCGCCGGCGGGCCTCAACAGTTCGGCTGCAGCAGCGGctgcggcggcggcggcggcggtgAGCGCACCTTCGGCCAGTGCATGCTCGTGTCTCAGCTGCCACAGCGGCGGCGCGCTCAGTTCTCGCAGCGCGGGCACGGACTTCACATGCACGGCAAGCGCGCCCAGGTCCGAAAGCGGATTTCTACCCTATTCGGCTGCGGTACTGAGCAAAACCGCCGTGCCCTCGCCAGACCAGAGAGAGGAAAGCGCCCTCAATAGATAACTTGACACTTGAACATGAAACGAAAGCTACTTTTGATTTTAATCAACATCGTGTTGTTAGCGCATTCAAAGTACTAAGGACATTTTTCCCAAGCCATTCCAAGCAGAACCCATTATCCAAGaccataaaatataaacaattattaaaatgataacatCCGGAACTAGCGCCagatgcaaaaaagaaagattcGGCATCGAGAAAACAATATGGCTAAATAATAGCAGATGTATGATCCAgtttccattattttttttcctaatttttttttttttttttcaattttcgtCTTCAAATATTATGACTTAACACACACCTATTTCATGCtctaaagagaaaaatatggtgCATGTGCAACTTTTAGTGTCTACTGAGGTAccaggatgaggatgatgacgATGCCGTTCAGGGTCTCCCTTAATTCGATGGAGCTATAGGCGCTGAGACTCTACACTGCTTCCACAGTGTCAATTCTGCTGTTAATAATGTGCAGATTATGACGAAAATTGCCAATCATGCACCTTGATGGAGCTCCTTTGAAAGAGAAAATGTAAGGAAGTTCCCTGTTCTGAGACCCGATGTCACATCATAACAACCCGCTGTGGGAAGTCATTAGACGAGGCAGATAAAGGACCTTGTGCTTCACACATTGTTATTGGTGCATATTGTACAGTAACAAACGTGGCATTC

Function

symbol description
evx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within ventral spinal cord interneuron specification. Predicted to be active in nucleus. Is expressed in interneuron; mesenchyme pectoral fin; and spinal cord interneuron. Orthologous to human EVX2 (even-skipped homeobox 2).

NR:

description
homeobox even-skipped homolog protein 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU100221 False 1797 lncRNA 0.38 1 17695290 17697086
XM_026912926.2 True 2440 mRNA 0.50 3 17696264 17699980

Neighbor

gene id symbol gene type direction distance location
lnpa lnpk coding downstream 16129 17667566 ~ 17679161 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding downstream 135217 17556819 ~ 17560073 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding downstream 139125 17529937 ~ 17556165 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding downstream 172239 17486048 ~ 17523051 (-)
LOC113547453 chrna1,LOC108266097 coding downstream 213281 17473115 ~ 17482009 (-)
nfe2l2a nfe2l2,LOC107579917 coding upstream 181791 17881771 ~ 17896933 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding upstream 237073 17937053 ~ 17991511 (-)
prkra prkra coding upstream 354808 18054788 ~ 18062269 (-)
casp10 NA coding upstream 368248 18068228 ~ 18076322 (-)
LOC113526302 LOC108266276 coding upstream 382135 18082115 ~ 18084871 (-)
LOC117597450 NA non-coding downstream 263859 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 303343 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 348940 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 370412 17324045 ~ 17324878 (-)
G84177 NA non-coding downstream 383335 17307569 ~ 17311955 (-)
G84394 NA non-coding upstream 26673 17726653 ~ 17727997 (-)
LOC117597384 NA non-coding upstream 40657 17740637 ~ 17744025 (-)
G84411 NA non-coding upstream 133395 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 431430 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 433422 18133402 ~ 18133689 (-)
sp3a sp3 other downstream 314118 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 655447 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1288812 16370227 ~ 16406478 (-)
G83554 NA other downstream 1474424 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1618670 16043283 ~ 16076620 (-)
LOC113526313 baz2b other upstream 1213407 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1743111 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1868769 19568749 ~ 19586103 (-)
G85848 NA other upstream 2526748 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2694491 20394471 ~ 20423244 (-)

Expression


Co-expression Network