LOC117597384


Basic Information

Item Value
gene id LOC117597384
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17740637 ~ 17744025 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU100243
GTAAGTCACAATGAAATCCACACCGCACAAGTTTTTCCTCCTGAGTTTTTAAACCAAAAGAGCCGGTGAAGATGAGATATTTAAACAGTTCTCCAGTTCTGTCTCCAAGCTAGATGCGCTGCTCTTTAGCGCATTCGTAAAGCTAGGTGGATGCAAGAAAAATAATGGACTCTTACCTACGCTATTAGTGCGAAGCTGCAACATTTCCACATACGATTAACCATTAATCACGCTTTGAAATGTAGTACACTTTTGCTGGAGCTTCATGTTTAAAGTTGTGCTTAATGGGATAAATCCTGCTGTCTCTGTGGCTTAACATGGTTTGCCTTTATCTGACTACAATGTTTTCGCCCACGCATTGTTACGagtggaTTAGTCAAAGCAAGGATGAAGATGAAGCGACATGGGAACGTGGCCGAACACGCTTGTCCTGAGGAGAGAATGCGAGCGCTCTCCGTTTGCAGCATATGTTCATAGAGCAATAAAAGTGAAAGATTTACGGTCCTCGGCCGGCCCCCAACAGCCTCTCACCCTTTCAGGAATTACTGACCATGATTTACAGCAATGCACATCTCCGTCATCCCTTTCTAACCACTGGCATACTTTTCGAAATAATCTGCAATTACTTCCTATCTTCACAAATAccaaatacaaaattaaatttgtCTTGGattgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcctccGATCGTGAAGATTAATTTTCTcacaattatttgttttttaaggtTATCCTCGGTTAATTTAATACCATAAAATGCATACAGACTCTCTTCTTTCCTATCAATAAACACATAAAGCCCA
>XR_004578231.1
TCACAATGAAATCCACACCGCACAAGTTTTTCCTCCTGAGTTTTTAAACCAAAAGAGCCGGTGAAGATGAGATATTTAAACAGTTCTCCAGTTCTGTCTCCAAGCTAGATGCGCTGCTCTTTAGCGCATTCGTAAAGCTAGGTGGATGCAAGAAAAATAATGGACTCTTACCTACGCTATTAGTGCGAAGCTGCAACATTTCCACATACGATTAACCATTAATCACGCTTTGAAATGTAGTACACTTTTGCTGGAGCTTCATGTTTAAAGTTGTGCTTAATGGGATAAATCCTGCTGTCTCTGTGGCTTAACATGGTTTGCCTTTATCTGACTACAATGTTTTCGCCCACGCATTGTTACGagtggaTTAGTCAAAGCAAGGATGAAGATGAAGCGACATGGGAACGTGGCCGAACACGCTTGTCCTGAGGAGAGAATGCGAGCGCTCTCCGTTTGCAGCATATGTTCATAGAGCAATAAAAGTGAAAGATTTACGGTCCTCGGCCGGCCCCCAACAGCCTCTCACCCTTTCAGGAATTACTGACCATGATTTACAGCAATGCACATCTCCGTCATCCCTTTCTAACCACTGGCATACTTTTCGAAATAATCTGCAATTACTTCCTATCTTCACAAATAccaaatacaaaattaaatttgtCTTGGattgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcctccGATCGTGAAGATTAATTTTCTcacaattatttgttttttaaggtTATCCTCGGTTAATTTAATACCATAAAATGCATACAGACTCTCTTCTTTCCTATCAATAAACACATAAAGCCCATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU100243 True 842 lncRNA 0.41 2 17740639 17744025
XR_004578231.1 False 839 lncRNA 0.41 2 17740637 17744020

Neighbor

gene id symbol gene type direction distance location
lnpa lnpk coding downstream 61476 17667566 ~ 17679161 (-)
atp5mc3a atp5g3,LOC108266717,LOC108424356,LOC103027531,LOC105908030 coding downstream 180564 17556819 ~ 17560073 (-)
atf2 atf2,LOC107739459,LOC107671311,LOC107657392,LOC107742976 coding downstream 184472 17529937 ~ 17556165 (-)
chn1 chn1,LOC107742958,LOC107739458,LOC106590032 coding downstream 217586 17486048 ~ 17523051 (-)
LOC113547453 chrna1,LOC108266097 coding downstream 258628 17473115 ~ 17482009 (-)
nfe2l2a nfe2l2,LOC107579917 coding upstream 137746 17881771 ~ 17896933 (-)
pde11a pde11a,LOC107671328,LOC107657382 coding upstream 193028 17937053 ~ 17991511 (-)
prkra prkra coding upstream 310763 18054788 ~ 18062269 (-)
casp10 NA coding upstream 324203 18068228 ~ 18076322 (-)
LOC113526302 LOC108266276 coding upstream 338090 18082115 ~ 18084871 (-)
G84394 NA non-coding downstream 12640 17726653 ~ 17727997 (-)
LOC117597450 NA non-coding downstream 309206 17407218 ~ 17431431 (-)
G84227 NA non-coding downstream 348690 17391684 ~ 17391947 (-)
G84189 LOC108266646 non-coding downstream 394287 17332492 ~ 17346350 (-)
G84182 NA non-coding downstream 415759 17324045 ~ 17324878 (-)
G84411 NA non-coding upstream 89350 17833375 ~ 17833589 (-)
G84881 NA non-coding upstream 387385 18131410 ~ 18131998 (-)
G84880 ino80d,LOC106582458 non-coding upstream 389377 18133402 ~ 18133689 (-)
G84882 LOC108266575 non-coding upstream 390811 18134836 ~ 18135614 (-)
G84883 LOC108266575,LOC108424342 non-coding upstream 391644 18135669 ~ 18137083 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 40657 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 359465 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 700794 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 1334159 16370227 ~ 16406478 (-)
G83554 NA other downstream 1519771 16219964 ~ 16220866 (-)
LOC113526313 baz2b other upstream 1169362 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 1699066 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 1824724 19568749 ~ 19586103 (-)
G85848 NA other upstream 2482703 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 2650446 20394471 ~ 20423244 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000353_00352980_00353273 NA coding CI01000353 null 351756 ~ 353287 (-)