actr3 (actr3,LOC103365687,LOC107660280,LOC101066039)


Basic Information

Item Value
gene id actr3
gene name actr3,LOC103365687,LOC107660280,LOC101066039
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19904974 ~ 19918083 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912620.2
TCCCCGCCGTGCGCCGCTCAGCGAGTGCGGAAGTGACTGTAAACTTCACAGTGCGGGTGAAAGGGTTCCGCCTTACATTCATCCTGTAGCCGACACTTCTAGCATTTCTCCGTTGTTTAGTAAGGCATCTTCGGCTGTGAGACAACAGGAATGGCTGGGAGATTACCGGCGTGTGTTGTGGACTGCGGTACAGGatATACTAAACTGGGATATGCAGGAAACACGGAACCTCAGTTCATCGTACCATCATGCATTGCCATCAAAGAGTCGGCGAAGGTGGGAGACCAGGCCCAGAGAAGGATGATGAAAGGCGTGGATGACCTCGACTTCTTCATCGGAGACGAGGCTATCGACAAGCCCACCTACGCAACCAAGTGGCCCATCAGGCACGGTATCGTAGAGGATTGGGATCTAATGGAAAGGTTCATGGAACAGGTCATCTTTAAGTATCTGAGGGCGGAGCCTGAGGACCACTACTTCCTGCTGACTGAGCCTCCtctaaacacacctgagaaCCGAGAATACACTGCAGAGATCATGTTTGAGTCCTTTAATGTGCCGGGACTTTATATTGCCGTGCAGgctGTCTTGGCTCTAGCAGCATCCTGGACCTCTCGGCAGGTTGGAGAGAGGACCCTGACCGGTACAGTCATTGACAGTGGAGATGGAGTCACTCATGTCATCCCTGTGgcAGAAGGCTATGTGATTGGCAGCTGCATAAAGCACATCCCCATTGCAGGCCGTGACATTACCTACTTCACACAGCAactgttgagagagagagaggtgggaaTTCCACCTGAGCAGTCCCTCGAGACTGCTAAAGCTGTCAAgGAGCGCTTCAGTTACGTGTGTCCTGACCTGGTGAAGGAGTTTAATAAGTACGACACAGACGGCTCGAAATGGATAAAGCAGTACACCGGCATTAATGCCATCAGCAAGAAAGAGTTTACCATCGATGTGGGATACGAGCGCTTCCTTGGCCCAGAGATCTTCTTCCACCCTGAGTTTGCCAATCCGGACTTCACTCAGCCAATCTCAGAAGTGGTTGATGAGGTTATCCAGAACTGTCCCATTGATGTGCGTCGTCCTCTCTATAAGAACATTGTTCTGTCAGGAGGCTCTACCATGTTCCGTGATTTCGGCCGGCGCCTGCAGAGGGACCTGAAGAGAACCGTGGATGCTCGTCTCAAACTGAGTGAAGAACTCAGCGGTGGCAAATTGAAGCCCAAACCTATTGATGTGCAGGTCATCACTCACCACATGCAGCGCTACGCTGTGTGGTTCGGAGGATCCATGCTGGCCTCAACACCTGAGTTCTACCAGGTGTGTCACACCAAGAAGGATTATGAGGAAATCGGCCCCAGCATCTGTCGCCACAACCCTGTGTTTGGTGTCATGTCCTAAAGAGTCcacagacctacacacacatgcatacacatatacacaaaggGATTGGGGTTGGGGTGGTCAGGGCTGGGGAGAACAAAGAGCAGGCCACTGGAGAGAGAGCTCATTTCGGTTAACACCAAACCTGTCTGCTGGATCCAGATGATGAATGTTGTGTTTGTTCGTTCGTTCGTTTGTTCATGTTGTTCCCAGTATAAGGGAAAATGCGATTACTAGACCAAAATGACTCCAGCTCTTCTCTGCCTCTGCTCAGTAATCTGTGGgtgtctaataaaaaaaaaaaatcccccgtTGAGTAAAAATGTGAGTAAACAATAATATCGACATTCATTATGGTAGTGGTGCAGAAGACTGCTGGTGTTATTCATGTTTAAAGTAAAAAGCGACTCAAGCGATTTATACCTAAATAAATTGACCATGCAAGTCTTCTCCCCCTGTTCCCAAGTTGCATCACACTCGAGGTGCTTCATGTCCTTTAACAGGCAAAGCAGGGGGGAAACTCagaccagattaaaaaaaaaaa

Function

symbol description
actr3 Predicted to enable ATP binding activity and actin binding activity. Predicted to contribute to actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation. Predicted to act upstream of or within actin filament organization. Predicted to be located in cell projection. Predicted to be part of Arp2/3 protein complex. Predicted to be active in actin cortical patch. Human ortholog(s) of this gene implicated in opisthorchiasis. Orthologous to human ACTR3 (actin related protein 3).

NR:

description
PREDICTED: actin-related protein 3

GO: NA

KEGG:

id description
K18584 ACTR3, ARP3; actin-related protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912620.2 True 1933 mRNA 0.49 12 19904974 19918083

Neighbor

gene id symbol gene type direction distance location
LOC113525964 dpp10,LOC108424244,LOC107569026,LOC107572644 coding downstream 27979 19786091 ~ 19876995 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding downstream 202326 19692961 ~ 19702648 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding downstream 223434 19675915 ~ 19681540 (-)
tmem37 tmem37 coding downstream 336913 19565266 ~ 19568061 (-)
cobll1b cobll1 coding downstream 368570 19496806 ~ 19536404 (-)
LOC113525902 LOC108266171 coding upstream 130708 20048791 ~ 20077583 (-)
fzd7a fzd7a,fzd7,LOC108267025,LOC107752890,LOC107668396,LOC107751502 coding upstream 162175 20080258 ~ 20083368 (-)
raph1a raph1,raph1a,LOC107668371,LOC107688759,LOC107592998,LOC107752894 coding upstream 321016 20239099 ~ 20266541 (-)
fer1l6 fer1l6,LOC107593018 coding upstream 426840 20344923 ~ 20359285 (-)
prkag3b prkag3,LOC108266105,LOC107738101 coding upstream 444073 20362156 ~ 20368428 (-)
G85749 NA non-coding downstream 685 19903930 ~ 19904289 (-)
G85493 NA non-coding downstream 361124 19543611 ~ 19543850 (-)
G85459 NA non-coding downstream 426580 19464152 ~ 19478394 (-)
G85461 NA non-coding downstream 431653 19473006 ~ 19473321 (-)
G85460 NA non-coding downstream 437798 19464775 ~ 19467176 (-)
G85767 NA non-coding upstream 18824 19936907 ~ 19937123 (-)
G85768 NA non-coding upstream 19321 19937404 ~ 19937613 (-)
G85774 NA non-coding upstream 31508 19949591 ~ 19950708 (-)
G85782 NA non-coding upstream 57322 19975405 ~ 19976607 (-)
G85784 NA non-coding upstream 64670 19982753 ~ 19983112 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 318871 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 410459 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 936482 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 2204994 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 2523802 17371979 ~ 17381172 (-)
G85848 NA other upstream 308645 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 476388 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1217963 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 1381789 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 1539650 21457733 ~ 21459404 (-)

Expression


Co-expression Network