G85460


Basic Information

Item Value
gene id G85460
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19464775 ~ 19467176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101477
AGACATTTATTCCCTCCACAGAGTTTCCCAAGCTGGAGAGCCTGATTATGCAGGAGTTTTGGGAACACAAACATTTCATTCAGTTCCTCTTGCTCCTTTGATTAATCTATATTTCTCATATAATTGAAAATGTACTGATTTGTACTGATATTACAGTGTATATGAGATGTGCTTTTTAGTATCATGAGGTTCTGTAGGCTTATTACAGTTCACTGATTACAAGTTATGCATCCAGGTACATGCAGAAACTGCATTTCTTCTGGAAAACCAGATAACTTCACGGTCCCTCATTTTGAGGAATCATCAGTGCAGATTAGAGAGTAATCCAATGAGACGAGGTGCGGTGGAACAGGTTAAATTCACACACTTGTCCCACAGCAAGACATGCTATAAGTTTTGTGAGAGTTTTGAGGGAGGTTAGGTGTCAagtgcatataaataaaatcagccaGAGGTTAAACCCTTAAATTCCCAGCAATCTGTGGATCCAGATTCTTGTTCCTCACTTTTGTGGGGACTACAtgtctttctcattttttattcTAGGTGTTAAGTAGTCAGTGAATAACATCATTTGATATGAATAACCGAATAATAAACTAGGAAGTGGTAAAATTATGTGGAGAACGTCCAGAGGCACATGTATGGATCCAAAGTATTTATCTTGTGTAATGGACAATTCAATCAGAATTGAATTAACCATTCTAGACAATTTAACGGTTAAACAATGTAATTTTGAGTGCGTGCTTCAGAGATGTCAGAGCTGTTTGGAGATGTCAGAGCTGTTTGGGACCCTGCCATTCATGTCACAAAcaagagatggatggatggtgagAGACTGAGGGAGCATTGGATAAGTACTGGTCAGGCCAAGGCCAGTTGTCTGATATTCAGATAAAGATGCAGCTGTGGGGCGAGAGGTCATGATAACAGAAGGCCAGACAGTGAACTGGTCTATACTGTCCTGTCCTTGAGATGAAAACTGTAAAGCATCTCTACAGGCTGGAGTAGGGCTAACCTGGAGAACACATACTGCGGTATTCATTCGAGTTCAGCAGTTCGGTCCACACACTTCTGCAGTGTGCAGAGTTAAATGCCCTTAAACTCTCGGACTTACTTTCCTCATGCTtataacttaaaaataaactggAAAATAAAGCGGAAACAGTGCCAATTCTGAAACTGATCCgaacaaacaaattaaagctgtttaaatgtttttcccAGCTCATCTCTTACTTTCGGTATTCAGTCAGGTTCAAGATGGGAATCACAGAAACGTCAGGACACAGAAAAGTCTGTCCTGTATCACCTTCATCTCAAGAAGCCGAGTAGAATATTTTATCAGTTTGAAAGAAACAAACCTTATCTATAGTACCTGTGCTTTACCAGGATTAAATCTAAAGTAGAATAGAATGTGCTTAGGTCTATTCACAGATACATCACTGCTGAATGATTACTCCAGAGAACATTTTAGTTCTAAAATTCCCTTTCAAAAAATAGGCAGATgatattaaataatgcactagtGTCCGTCAGGAAAAGTGAggcatatttatttttctgagaaAACCACCATAAAATGGCTTTTATTCCACTATTCTCTGAGTAATGGAAATCTcgtgcagtgtttgtgttttgttaaggCACTATACACCCCTTAGGCAAGATTCCCTcttcataaatacatttacaaaggTTTGTAAAACAGCAATACCTCCACAGGAACTAATTAGGACctggaaagaaagaacaaaatttTCATCAATGCAGTTCCTTAATTGCATTGTACGATGAGATGCTGACAGTTGGTGCATAAAGCTGTCATGGGTGTAATCAGGTTACTGCTAATCTTATTTCCTTGTTTAACTGAGCGATAGCCGGAGGGAGACAGTCTCTCAGTGTTCTACTCTCCCCAAGCATGCTCTACTTCAAAGCTTATCTCTGCACACGGAGAGCCAGACAcccattatacacacattttaacgcTTGACTTGTGTATGTTCTCTATCCTCTCAGGTTTTAGAATATGCTGAATGGAGCAGCTGAGTGAGTTGTGCATGTGTCTCTCCAATTGTGCTTGAAGTGTATGATTGTATGAGCTAGAGGTGCACCAAGAGCAAACATAGCCTGAACCTGACCTGCATCCACTCCTCATTCCCACTTACCTTTCAGAGAAAGGAgaactgaacacactcagaagcAGATTGTACACATGCTTTTACTTTAGTTGGCTACTATGTTGATAAACAGAAAATTCATTGATTTTAGATAAAATTTGTAATACATTTGAAAGTGGGGAGGGACTGTTAACATCAGTAACTGGCATTCCATATCAAAACAGCACGAAAGCCAACACActagaaagaatgagaaaag

Function

NR:

description
PREDICTED: S phase cyclin A-associated protein in the endoplasmic reticulum isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101477 True 2379 lncRNA 0.39 2 19464775 19467176

Neighbor

gene id symbol gene type direction distance location
fign fign,LOC107722902 coding downstream 92687 19330693 ~ 19372088 (-)
LOC113526240 kcnh7 coding downstream 215568 19184821 ~ 19249207 (-)
ifih1 ifih1 coding downstream 281872 19161216 ~ 19182903 (-)
fap LOC108267048,LOC108424318 coding downstream 304152 19147115 ~ 19160623 (-)
gcgb gcg,gcgb,LOC107730589,LOC107677918,LOC107722905,LOC107674768 coding downstream 319370 19144192 ~ 19145405 (-)
cobll1b cobll1 coding upstream 29630 19496806 ~ 19536404 (-)
tmem37 tmem37 coding upstream 98090 19565266 ~ 19568061 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding upstream 208739 19675915 ~ 19681540 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding upstream 225785 19692961 ~ 19702648 (-)
LOC113525964 dpp10,LOC108424244,LOC107569026,LOC107572644 coding upstream 318915 19786091 ~ 19876995 (-)
G85382 NA non-coding downstream 195823 19268662 ~ 19268952 (-)
G85211 NA non-coding downstream 411725 19051398 ~ 19053050 (-)
G85205 NA non-coding downstream 426343 19038227 ~ 19038432 (-)
G85069 NA non-coding downstream 796564 18667991 ~ 18668211 (-)
G84975 xirp2 non-coding downstream 908910 18540353 ~ 18555865 (-)
G85461 NA non-coding upstream 5830 19473006 ~ 19473321 (-)
G85493 NA non-coding upstream 76435 19543611 ~ 19543850 (-)
G85749 NA non-coding upstream 436754 19903930 ~ 19904289 (-)
G85767 NA non-coding upstream 469731 19936907 ~ 19937123 (-)
G85768 NA non-coding upstream 470228 19937404 ~ 19937613 (-)
LOC113526313 baz2b other downstream 496283 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 1764795 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 2083603 17371979 ~ 17381172 (-)
mettl8 mettl8 other downstream 2424932 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 3058297 16370227 ~ 16406478 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 101573 19568749 ~ 19586103 (-)
G85848 NA other upstream 759552 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 927295 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1668870 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 1832696 21299872 ~ 21305299 (-)

Expression


Co-expression Network