G85774


Basic Information

Item Value
gene id G85774
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19949591 ~ 19950708 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU101866
AGACATTGTGCCTAAACAGGACAGATGCTGTATTAGTGCTGGAAAGCCTCACCTGCGACAGGACTGAGGAGAAGCACGGCGTAAAGCCCCAGAGTCAGGACCCAGAGCCGGCCGCACACGGTCATGTTTCCACCCCAGCAGTCACACAGGGCCCACAGCTCCCACTGCTCCCAGCTGATTATATGCCTCCTCTTTTCCCCAGGCGAGTATCCGAGTTCATTCGCGAGGATCAAACAGTCCAACACCGGAGTCTTGGCACACCAGTGTGGACGGACAGTACATGATTTCCACACAGCTTCTGCTCGCTGTTGACGCTGACTCCCTGCACGCAGCGTTAAGTTCGTTAGCTTCGGCAACTTAATCGATCCgtctagctagctggctagctctCCAGTCTCGCGCTGGTGCGGTGTTAATATTAGCCAGCTTGCTCTGTGACTGACGGGCATTGCGTCCTCGTAACTTAGCTAGTAACTTAGCTAAAATGTCGCCGCCACAAATATCTCTCTATAATCTCTCCTTTAGCTAGAATGTAGCTCGCCGGCTAAGCAGACTAAAGTTGGCTAGCTAATTTGCCTAGCTAGCTCTCAGCAGTGGGTCAGTTCTGCGCTGCCGACCGTCGTGACAGTCCATGTCGGTGAGTTAGCTAGCTCCGGGAGCTAGGACACCTCAAACACTTGGCAGCCTTCTCTACTCTTTCACTCGCGCTCGAAAGATGAATTGAAACACAGCCGCCGTAATGAAATTTAACTtatctgtcaaaaaaaattaaaaagaaaaaataaaaaaaacacacacacatacacacactcagccacCGCCGGCGTCGTCGTCGAGCTCCACCACCGTCGGGGGAAAATCTCCTCCAGCAAGAGCGACTTCTCAGGAGGGAAAATTCGTCCAAATATTTCCGCGTTTGACTCTaatccaaaaaagaaaaaaagggggggacGTTTAACGGTGAAATGAGATTCTTAACCGTCTAAACACGCACGGCCACTGTGGAGAAGCGAAGCCGCGGTTAAGACTCGGTTAGATTACCGCGGAGCTGTTTTGCATGGACGAGTTGTTGTTGCGAGTCTCAGCCGTACGCGCGCGACCTCTCGCCAAGTTCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101866 True 1118 lncRNA 0.51 1 19949591 19950708

Neighbor

gene id symbol gene type direction distance location
actr3 actr3,LOC103365687,LOC107660280,LOC101066039 coding downstream 31508 19904974 ~ 19918083 (-)
LOC113525964 dpp10,LOC108424244,LOC107569026,LOC107572644 coding downstream 72596 19786091 ~ 19876995 (-)
ddx18 ddx18,LOC107673737,LOC107741906,LOC107660632 coding downstream 246943 19692961 ~ 19702648 (-)
insig2 insig2,LOC107549777,LOC107689500,LOC107670326,LOC107752584,LOC107720943 coding downstream 268051 19675915 ~ 19681540 (-)
tmem37 tmem37 coding downstream 381530 19565266 ~ 19568061 (-)
LOC113525902 LOC108266171 coding upstream 98083 20048791 ~ 20077583 (-)
fzd7a fzd7a,fzd7,LOC108267025,LOC107752890,LOC107668396,LOC107751502 coding upstream 129550 20080258 ~ 20083368 (-)
raph1a raph1,raph1a,LOC107668371,LOC107688759,LOC107592998,LOC107752894 coding upstream 288391 20239099 ~ 20266541 (-)
fer1l6 fer1l6,LOC107593018 coding upstream 394215 20344923 ~ 20359285 (-)
prkag3b prkag3,LOC108266105,LOC107738101 coding upstream 411448 20362156 ~ 20368428 (-)
G85768 NA non-coding downstream 11978 19937404 ~ 19937613 (-)
G85767 NA non-coding downstream 12468 19936907 ~ 19937123 (-)
G85749 NA non-coding downstream 45302 19903930 ~ 19904289 (-)
G85493 NA non-coding downstream 405741 19543611 ~ 19543850 (-)
G85461 NA non-coding downstream 476270 19473006 ~ 19473321 (-)
G85782 NA non-coding upstream 24697 19975405 ~ 19976607 (-)
G85784 NA non-coding upstream 32045 19982753 ~ 19983112 (-)
G85781 bmpr2,bmpr2b,LOC107751503 non-coding upstream 41819 19992527 ~ 19992756 (-)
G85785 bmpr2 non-coding upstream 48443 19999151 ~ 20000432 (-)
G85778 bmpr2 non-coding upstream 52348 20003056 ~ 20007022 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other downstream 363488 19568749 ~ 19586103 (-)
grb14 grb14 other downstream 455076 19443091 ~ 19494515 (-)
LOC113526313 baz2b other downstream 981099 18913387 ~ 18968492 (-)
evx2 evx2,LOC107657379,LOC107671304 other downstream 2249611 17695290 ~ 17699980 (-)
sp3a sp3 other downstream 2568419 17371979 ~ 17381172 (-)
G85848 NA other upstream 276020 20226728 ~ 20237615 (-)
abcb6b LOC108266852,LOC108423985,LOC107596549,LOC107750068 other upstream 443763 20394471 ~ 20423244 (-)
phgdh phgdh other upstream 1185338 21136046 ~ 21144621 (-)
dhrs9 LOC108423955,LOC108423956 other upstream 1349164 21299872 ~ 21305299 (-)
LOC117597354 NA other upstream 1507025 21457733 ~ 21459404 (-)

Expression


Co-expression Network