XLOC_037675


Basic Information

Item Value
gene id XLOC_037675
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11822379 ~ 11855305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075301
CAGCTTTCTTGTTGTTCCTATAGTTtgttaataaatatgaaaaattctGATAGTACCTGttacgtgtgtgtttgtgACACCAAAGAAAATTTTGACCTAGTCCAGCACTCTACAGAAAGCTTGAAGTATCTGATTAAACTACAGTCTATTGCCTTCTCTCACTCCTGCAACCAGCTGGTGGAACCATAGTGTGGTTCATCTCAAACAAGCCCAAGGTCTTCAGACTTACTAAAAACTTCAAGGTTATTTGACTTTgttcaacccagactcattggagatatgtgcccagggcttcATTTTTGAGAACAGAGAAACATGTACCCTaaagcagggattctcaaccagtCAGCTGTGGCCCCCTAGTGGCCTCATTGATCCTGCAGATGTTTGGAGAAATTGATGCCCTACCTGGGGGTCTGCATTAACGAGACTCTCCTAATGAATGGGAGGACACTAAAAGGCATCTTCTTTCCATCCATGTATCAACTCCAAGACAGGCAGGAAAGTCTCTTCCATGTCAATATCCTCTTGGCCTCACCTGTCCACGCGAATCCTCCCAAAGTAATCTAAGCATCAAGCACATCCACTTTCCTTCAAACTGATGTGATCGGGGCGATGCGCCGAGGATGCGGGGCGACCCAGGTGACCTTGTTCCATATTCAATTTCATCGGCCCTGCGTTCCCATGGACAGGTCCTCCGCCAGCTGCTCTCCCCGTCGCACAGTTCCTTGTGCAACAGCGAGAACATCAGTCTGGGGACGACTTCAAGAGCCCTTATTGATGGTGTTGTCAAGGCGAGGGCGAGAGCAACTTAATCTCTCTCAATTAATACCCCCGCCTGCGGCCACCACGTCCCAGTGCTCAGTAGCCCTTTTCCCCCACACAGGCCCCTGAGCGCCTTGCTGACACTCACCTTTCTACTCCTAATGAGTCCCTCTCCGATTTGCTGCCATTGCTCCAGGCCTAAAAATTACCCTAAATCCCAACACATCCTTGACTCTGTGCATGTCCACCCTGTGTGAAGATAAGGAGGAATATCCTTTTTAATGTCTGTTGTGGACCCTTTTTAGATTGTAATGATGTAATAACAGTGTGCTACATTGGTGATGAATTAAAGCTCATGTGAAATTTCCTGTTTTAGTTGAAAATACATCCacatgctgaaataaaagtctcagcaacttcttcAACCTCATGCTGACTTTAAAG
>TCONS_00073979
GTCTGGTCTTATCAGCTTTCTTGTTGTTCCTATAGTTtgttaataaatatgaaaaattctGATAGTACCTGttacgtgtgtgtttgtgACACCAAAGAAAATTTTGACCTAGTCCAGCACTCTACAGAAAGCTTGAAGTATCTGATTAAACTACAGTCTATTGCCTTCTCTCACTCCTGCAACCAGCTGGTGGAACCATAGTGTGGTTCATCTCAAACAAGCCCAAGGTCTTCAGACTTACTAAAAACTTCAAGGTTATTTGACTTTgttcaacccagactcattggagatatgtgcccagggcttcATTTTTGAGAACAGAGAAACATGTACCCTaaagcagggattctcaaccagtCAGCTGTGGCCCCCTAGTGGCCTCATTGATCCTGCAGTCTCTTCCATGTCAATATCCTCTTGGCCTCACCTGTCCACGCGAATCCTCCCAAAGTAATCTAAGCATCAAGCACATCCACTTTCCTTCAAACTGATGTGATCGGGGCGATGCGCCGAGGATGCGGGGCGACCCAGGTGACCTTGTTCCATATTCAATTTCATCGGCCCTGCGTTCCCATGGACAGGTCCTCCGCCAGCTGCTCTCCCCGTCGCACAGTTCCTTGTGCAACAGCGAGAACATCAGTCTGGGGACGACTTCAAGAGCCCTTATTGATGGTGTTGTCAAGGCGAGGGCGAGAGCAACTTAATCTCTCTCAATTAATACCCCCGCCTGCGGCCACCACGTCCCAGTGCTCAGTAGCCCTTTTCCCCCACACAGGCCCCTGAGCGCCTTGCTGACACTCACCTTTCTACTCCTAATGAGTCCCTCTCCGATTTGCTGCCATTGCTCCAGGCCTAAAAATTACCCTAAATCCCAACACATCCTTGACTCTGTGCATGTCCACCCTGTGTGAAGATAAGGAGGAATATCCTTTTTAATGTCTGTTGTGGACCCTTTTTAGATTGTAATGATGTAATAACAGTGTGCTACATTGGTGATGAATTAAAGCTCATGTGAAATTTCCTGTTTTAGTTGAAAATACATCCacatgctgaaataaaagtctcagcaacttcttcAACCTCATGCTGACTTTAAAG
>TCONS_00073978
GTCTGGTCTTATCAGCTTTCTTGTTGTTCCTATAGTTtgttaataaatatgaaaaattctGATAGTACCTGttacgtgtgtgtttgtgACACCAAAGAAAATTTTGACCTAGTCCAGCACTCTACAGAAAGCTTGAAGTATCTGATTAAACTACAGTCTATTGCCTTCTCTCACTCCTGCAACCAGCTGGTGGAACCATAGTGTGGTTCATCTCAAACAAGCCCAAGGTCTTCAGACTTACTAAAAACTTCAAGGTTATTTGACTTTgttcaacccagactcattggagatatgtgcccagggcttcATTTTTGAGAACAGAGAAACATGTACCCTaaagcagggattctcaaccagtCAGCTGTGGCCCCCTAGTGGCCTCATTGATCCTGCAGGTATAGATGTTTGGAGAAATTGATGCCCTACCTGGGGGTCTGCATTAACGAGACTCTCCTAATGAATGGGAGGACACTAAAAGGCATCTTCTTTCCATCCATGTATCAACTCCAAGACAGGCAGGAAAGTCTCTTCCATGTCAATATCCTCTTGGCCTCACCTGTCCACGCGAATCCTCCCAAAGTAATCTAAGCATCAAGCACATCCACTTTCCTTCAAACTGATGTGATCGGGGCGATGCGCCGAGGATGCGGGGCGACCCAGGTGACCTTGTTCCATATTCAATTTCATCGGCCCTGCGTTCCCATGGACAGGTCCTCCGCCAGCTGCTCTCCCCGTCGCACAGTTCCTTGTGCAACAGCGAGAACATCAGTCTGGGGACGACTTCAAGAGCCCTTATTGATGGTGTTGTCAAGGCGAGGGCGAGAGCAACTTAATCTCTCTCAATTAATACCCCCGCCTGCGGCCACCACGTCCCAGTGCTCAGTAGCCCTTTTCCCCCACACAGGCCCCTGAGCGCCTTGCTGACACTCACCTTTCTACTCCTAATGAGTCCCTCTCCGATTTGCTGCCATTGCTCCAGGCCTAAAAATTACCCTAAATCCCAACACATCCTTGACTCTGTGCATGTCCACCCTGTGTGAAGATAAGGAGGAATATCCTTTTTAATGTCTGTTGTGGACCCTTTTTAGATTGTAATGATGTAATAACAGTGTGCTACATTGGTGATGAATTAAAGCTCATGTGAAATTTCCTGTTTTAGTTGAAAATACATCCacatgctgaaataaaagtctcagcaacttcttcAACCTCATGCTGACTTTAAAG

Function

GO:

id name namespace
GO:0005669 transcription factor TFIID complex cellular_component
GO:0016251 RNA polymerase II general transcription initiation factor activity molecular_function
GO:0140223 general transcription initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093040

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075301 False 1209 lncRNA 0.46 5 11822379 11855293
TCONS_00073979 False 1098 lncRNA 0.46 4 11822379 11855305
TCONS_00073978 True 1227 processed_transcript 0.46 5 11822379 11855305

Neighbor

gene id symbol gene type direction distance location
XLOC_037674 zc3h15 coding downstream 145888 11664797 ~ 11676491 (-)
XLOC_037673 NA coding downstream 167348 11595987 ~ 11655031 (-)
XLOC_037672 umps coding downstream 235309 11576502 ~ 11587070 (-)
XLOC_037671 NA coding downstream 250025 11571312 ~ 11572354 (-)
XLOC_037670 cryba2b coding downstream 261947 11554089 ~ 11560432 (-)
XLOC_037676 znf804a coding upstream 51465 11906770 ~ 12034444 (-)
XLOC_037677 NA coding upstream 221538 12076843 ~ 12171785 (-)
XLOC_037678 nup35 coding upstream 404164 12259469 ~ 12401871 (-)
XLOC_037679 C1H3orf70 coding upstream 547984 12403289 ~ 12424794 (-)
XLOC_037680 ehhadh coding upstream 572921 12428226 ~ 12443726 (-)
XLOC_037667 BX000444.1 non-coding downstream 975830 10845918 ~ 10846549 (-)
XLOC_037663 NA non-coding downstream 1451754 10368380 ~ 10370625 (-)
XLOC_037651 AL954142.4 non-coding downstream 2451513 9355372 ~ 9370866 (-)
XLOC_037688 NA non-coding upstream 1034593 12889898 ~ 12903013 (-)
XLOC_037689 NA non-coding upstream 1090252 12945557 ~ 12948957 (-)
XLOC_037690 NA non-coding upstream 1099262 12954567 ~ 12956248 (-)
XLOC_037691 NA non-coding upstream 1241916 13097221 ~ 13120257 (-)

Expression


Co-expression Network