XLOC_037674 (zc3h15)


Basic Information

Item Value
gene id XLOC_037674
gene name zc3h15
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11664797 ~ 11676491 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073977
GAATGCATCGGGGCTGCTAGTGCGGTTAGCCTACGCTTACCTGTGAGCATACGGTTCTAACAGACATACGGCTTCTGGGTTTCTACGCTTTATATCAGCCCGTCTTCAGCGATATGCCTCCGAAAAAGCCTGCTCCAGCTGCAGCCAATAAGAAAACCCAAGAGAAGAAGAAAGAGAAGATCATCGAGGATAAAACTTTTGGTTTGAAAAACAAGAAGGGAGCTAAACAACAGAAGTTCATCAAAGCTGTGACTCAGCAAGTCAAATTTGGACAGCAGAATGCACGTCAGaTTGCTGCTGCTGAGTCTGAAAAGACCAAAAAGAAGGATGACAAGAAGAAGGAGCTGTCTGAGTTGAATGAGCTGTTTAAGCCAGTGGTGGCAGCTCAGAAAGTCAGCAAAGGCGTGGATCCCAAATCAGTGCTTTGTGCTTTCTTTAAGCAAGGCCAGTGCACCAAAGGTGATAAGTGTAAATTTTCTCATGACCTGTCTTTGGAGAGAAAATGCGAAAAAAGAAGCTTGTATGTGGACGGTAGAGATGATGAGCTGCTGGAGAAGGACACCATGGAAAACTGGGATGAAAAGAAACTTGAGGAGGTAGTGAACAAGAAACACGGGGAAGCTGAAAAAAAGAAGGCAAAGACACAAATTGTTTGCAAGTATTTCCTAGATGCTATTGAAAACAACAAATATGGCTGGTTTTGGGTTTGTCCTGGGGGAGGAGACAACTGTATGTACCGGCACGCTCTTCCTGTGGGCTTCGTTCTGAAGAAGGACAAGAAGAACGAGGAGAAGAACGAAGAGGAGATCTCGCTGGAGGATTTGATCGAGACTGAGAGATCTCTTCTGGGAGCAAACGTCACTCGAATTACTCTTGAAACATTCTTGGcctggaagaaaaggaaaaggcaAGAGAAACTGGCTAAAGCAGAACAGGACATGGAGAGAAAGAAAGCAGACTTTAAAGCTGGCCGAGCACTTGGGGTCAGCGGAAGGGAAGTGTTTGAGTTCAGACCTGAGCTTGTTGATGACGACGACGAGGAGGCTGATGATACTAAATACGCCGAAGAGGACTATAATTATGAAATGTCTAACcagGTGGAGGACACAGAGGAGGTGCAGGACATTGACATCGCTAGATTTATTCCTAAAGAGGTGGATAATGCGGGTATAACAGTGGCATCAGCGGACCGGTTTACAGCCAAAGCTCCACCCACAAACGACATAGATGACAATAAGTTAAGCGAGGCCTCTGGTGGAACCATGGAGAACGGAGAGCACAGCGAGGACCAGACGCTGGAAGACGGCGAAACCAATGAAGAGTCAGAGGCAGTGCCAGTAGACGAAAACCTGTTCACCGGCGAGGACCTGGACGAACTGGAGGAGGAACTCAACACACTGGACCTGGACGAGTGAACACTGGGACTGATGCATTATACATGAACTACACATGGCTTGAAGTGAATGACTATTTTCACAAATAACCAGAACCGCCATGTCAGAAACTGCTCTGCCTGCAATATGCACTCTCATCACTCGAGATGTCCCGGGATGCTACAGGAGAGACTGAAGTACATCATGTTGCTCTCTCTCTCAGATTTAATTTGGTTTTGGCTCTTTTGTTATCATTGTTATTACAGTCTACCCCAAAAAAGCACAGTCAAGTGAGGGTCTGGTTCTACAGCAGGAACATAATCCAAATATTTATGAGGCTATTGATTTGATATTTCAGCATTCTCTTTTTGAAAGATTTGATTTAGTGATCATCTTTGTAAGGTCATGCGTATGAAATGATTCAGATGTCCTCCTTGAGCACTATTGCCAACTGGTTTCTCATCTTTCCTGCTAATGAAGTGTTGCTTTGATGAAAACCAAGGGTCAGGTGATCATTTCAGACTTTAAACATGTAACCAACTGCATGCCTGTATCAGGATCAGAATGTAAATGGTGAAACAGTGATGCTGATGTTAAGTTGTTCAATAATCGGTTGATCGGATTGAGGTGTTGAATGTGAAATCTCCTGGATGTGGCCTTACGGAAGAAGATGCGGATGTCATTACTAATCAGAATTGCTGTCAAAAGGGTTTTTTTTGGAAGCGAGGGGTATGTGAGATGAGCTAGTAATATGTCTGTCATTTtgaattcatttgttttaaaatgccccCACCACAATACACCACaagaaattgtaaataaaaggaTATCAGATTACTGATTTTGAGTAAATTTGCCTGATTGTCCAATGTGTTTGAGACCAACTGGTCAAGACATTTGAAATATTCGTGGGTGAACCTGAATCTAAATAAAACCTGATTATTGTATTATCAATATCTGGTAATGTAATTAAAGAGCGCATCTGTCATGGGCTACATTACTGGCG

Function

symbol description
zc3h15 Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15).

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6239 Predicted to enable metal ion binding activity. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human ZC3H15 (zinc finger CCCH-type containing 15).

Ensembl:

ensembl_id ENSDARG00000015889

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073977 True 2379 mRNA 0.44 10 11664797 11676491

Neighbor

gene id symbol gene type direction distance location
XLOC_037673 NA coding downstream 9766 11595987 ~ 11655031 (-)
XLOC_037672 umps coding downstream 77727 11576502 ~ 11587070 (-)
XLOC_037671 NA coding downstream 92443 11571312 ~ 11572354 (-)
XLOC_037670 cryba2b coding downstream 104365 11554089 ~ 11560432 (-)
XLOC_037669 fev coding downstream 113093 11548233 ~ 11551704 (-)
XLOC_037675 NA coding upstream 145888 11822379 ~ 11855305 (-)
XLOC_037676 znf804a coding upstream 230279 11906770 ~ 12034444 (-)
XLOC_037677 NA coding upstream 400352 12076843 ~ 12171785 (-)
XLOC_037678 nup35 coding upstream 582978 12259469 ~ 12401871 (-)
XLOC_037679 C1H3orf70 coding upstream 726798 12403289 ~ 12424794 (-)
XLOC_037667 BX000444.1 non-coding downstream 818248 10845918 ~ 10846549 (-)
XLOC_037663 NA non-coding downstream 1294172 10368380 ~ 10370625 (-)
XLOC_037651 AL954142.4 non-coding downstream 2293931 9355372 ~ 9370866 (-)
XLOC_037688 NA non-coding upstream 1213407 12889898 ~ 12903013 (-)
XLOC_037689 NA non-coding upstream 1269066 12945557 ~ 12948957 (-)
XLOC_037690 NA non-coding upstream 1278076 12954567 ~ 12956248 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000036_01466321_01474630 NA coding CI01000036 null 1465479 ~ 1474630 (-)
bowfin (Amia calva) AMCG00001064 NA coding CM030137.1 CM030137.1 13473378 ~ 13486109 (-)