XLOC_037664 (tmbim1b)


Basic Information

Item Value
gene id XLOC_037664
gene name tmbim1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 10758339 ~ 10769097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073956
GAACGAATTATCCAGTCTGCTTAAAAATAAACTGTGGACCCCAAGTAACGTTAGTTGTCTTAGCGCCGTTTGTATGGTTTCACAGCTAATACTGATTACCATAAACATCTTACACTTTAAGCCATCCTGAAAAGTTTAGAGAAGTTGATATGGTCCGGTGCCAAAGACCCCATATCCATCTTTTCAAGTCAATAAAAAATAAGTTAGATCACTTCCAAAACCAAAACATGTCACATAATCCGGTACCTAATTAGGTAAGATGACTAGACTAGTTCTGGAAACAGATATTGAGCGGAGCCCAGTGAGAACTGAACCTGGAAACTGGAGACGGACTCCTAGTAGCGTTGCTTAgctccagccaatcagagcgcTCCAATGGGCACCTTGCGCCCTCACTGCATCAGCCGCTGCGTCACTGACGTACAGCAGAAAGAGTTTAGTCTGCGAGCGCTCGGTTCATTAGTGCTCTTGTGAACGGGGAGCATCAAAATGTCAAAATCAGATCCGCCTCCAAGTTATGAGGAGTCCAGACAGCAGTCTTATGGCCCACAGCAGCATGGAACCTATCCATACCCTCCCTACGGATTTCCAGCTCAGCCAGGGGTTTACACAGGGCCGGGACAGGCTGGCATTCACCCACAGCCAGGGCTCTGGCAGGGACCTGGATATCCCTCTACAGCAATGCCATCTATGATGCCGTCATTTATAGCACCAGGGATATTTTCCTCTAACCTCAgaGATGCAGAGGACGTTTCATCAACTGGTGTATGGGAGAGTATGAGTGTTCGACATGCCTTCATTAGAAAGGTTTATCTTATTTTAGCCGCCCAACTGTTTATCACTTCTTCAATCATAGCAGTGTTTGCGTTTGTTGAGCCTGTACGCCTGTTCGTCATCCAAAATCCTGCACTTTACTGGGCATCATTCCCGATTTATCTGGTTACTTACCTGATGCTGGTTTGCTGTGAAGGACCAAGGAGACGACATCCATGGAATCTCATTCTCCTGTTCATTTTTACTCTCACGTTATCTTACATGACTGGAACAATATCAAGTTACTTTGACACCAAAGCAGTGTTTCTGGCCCTGGGGATCACAGCGATTGTGTGTGTGATCGTCACAGTTTTCTCCTTTCAGACGAAGGTGGACTTCACCTCATGTACAGGTCTGCTCTGTGCTCTCTGTGTGGTATGCTGGTGACTGGCATCATCACTTCTATAGTGCTCTCTTTTCAATATGTAAGTGACTCTGTTTTGATTTACAACTTTACATTTCCCCTTTACGTTTTTACGTTTCTTTAAAGCAGgcattctcaaccggtgggccaTGGCCCAATAGTGGGCCACAAGGATACTGCAGATGGGCCGCAGTATAGGCAAGCTTAAAATTCATGTTTTCTGTGATTGAGTACTTTTTTGGACTCAAAACAGCCTCACTGTTATATACAGACTTAACTGTTGTTTAAACTTCCAACCGCTGCATACCGACTAGAACTACATTCTCAGCTGTATAAAGCAAATCCTCAAGCAAATGTAAAGATAACGATGATTAGAGTTTGTGCGCATCTTATGTCTGTGAATCGTGCTGTTTCAGAGTCGCACAAGTTTGCTGATTTACAAACGGTTTGCTCTTTGTTTGAACCCTTTAAAATATGCGTATAGTTGTCCAAATGTCCTGCGAGCGTTTTATAATGGAAGTGCGCCCGCACAAAAGGATTAAGCGAGAATCGGTGGTGTTTCAGTAGTGAACGGCTGTTTACTGTTCCTGACAGCGAACTCCAATAATATCTAGCTGCAAACCCAACGACTTTAGAGTGAcgcgtttcaacagatttagagtgtttttactgtattttacatttctttgctTATTTGTAATGGATATGAATAGTAGATCAATAAATGAATAGTAGTAGTCAGTCCAATTCAAAGcagaagtagtttttttttttttttttttgccatctcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTATGTCAGACAGGTGGgtcttcaaatatttttaaaaaagtaagtgaGCCCCGAAATGAAagaggttgagaacccctgctttaagtTATAAATAAGCAGAACGATAAAGGAAATTGTAGATCTAATCATTTTTGTATTCAATctgtaaatagtatttaaaaatttgCACTGAATTTTCATGACCAAAAACCAATTATTGATTTATCTATTTTAATAAGTATCGATATGTTAAACAATCTAAGAGGCCTTTAAATATTGTTTTGGACAATTAGTTTGACAATAAAGCTTATGGTCATGGCTATTCTAACTCAATGAAGTCTTTGGCATATTAGTGGCTTATTTTGAGGAATATAACTGAAATGTGTGacagatggattttttttttatttttaatttttttaaggaaGCATTAAGCTCCACACATCAGCATAAATGTCTCAACGGTGTCTGGAGATTCTGTGAAATAATAGGAATGATATTGTACCAATTCTTATAATTTAGCCACTAATTTACTGCATATCTTATAGTTTacatacatttgaatttgaatttattttttatttaacagggacaatgctcaataatcaacagtaaaactgtaaataagccagggttagccacaagggctaattttcatctgttgccccctgccagattttaaaaggcaacttaaaataaaaaaacacgtcattacacatacaaaaacagtaaagCTACATATGACAAAAAGAGATAAAAACATGCAAGTAAGAATTTCCTAAAATGTTAGCCAAGAGAATTAAACATGATTACAAACTTGATTTGCTTTTAGCCatttctttaacttgtatttaaaagtAGAATAATTTGTAACACCCCTTAAGTCAATCGGAAGTGTGTTCCAATAATGACTGGCTCTAAATGAGAAGACTGATCGTGCAAAAGTTGTACGTCTAAACTGCACAGCACAGTCTCCCCTGCAGATCGTGTTGCTTGACCGTTATTGTTCTTGTGTGTCACAAACTCACATAATGGAGGTGGAGCATatccatttaaaattttaaaaatcatacaagcaTCAGCCAAATATTTCATACTATCAAAgctcaataaataatgtttttgtattatattacaatGATGATACCTAATAGACTTTTGATCAAATACTTTCAGTGCCTGTTTATAAAGtgattcaacttattttaaaactgttttagcatGTGACCAACTAGTAAGACAATATGTAATAGGAGAAAAAATCATGGAGTGCATAAAAAGTTTTGCTGCTTCATTAGTCAAGTAAGGTCGTATATGCTTGAAGTATACATAATGTACATGCCTGAATTATACATAAGGCCTCTTACCAACCCAAACCCATGCCCGGATCTCATTTAGTGACTAAATAAGCTGTTATATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTCCCTCTAGTTGATATCGTCCAGATCTTCATCTTCCTCCTTCATATCACAGGGGGCTCAGAGTAAAACATTCCCATTTCAGAGACTGAGCTTTCTTTGAGATTATCTTCACTTCTTCAATCACGTGAATCTCAGATATCGCTGTGAACACTACTGACAGATTTTACAACTATGTAATGTTGTAACGTTTCTCATATTGATTTTCACTTCATTAACAATaagcactttatttttataacttaATTTGCACTGTGAAAACTTTACTgcagaattgtgtgtgtgtactaaaaGAGCTACACTGtgatttgttaaatattatttagcttGTAACTTGAAggtaaataaaatgacaaactgTTAGCCAATGTATTTTTACAAAGTGCTTATGATTTCATAAATGTAGGTAAACAGTGTCCATATTTTTGGCAGTCATAAATGCAGTCAAACTTACAGCAGAAAAACACTCAGACAAATAACATTGTTAATTTATTGTGCATGTGCggtttaaattatttgttataattCTCAAAAAAGGAACATATGTCAGTAGAAAAACCCTACATGTAAAGTGTGATTTTAATAACGCGTGATCTGAATGTTACCAGTTAAACATTGATTCCCTTCATTGATTTTGGTTGGACAGTTCAACCAAAACAtaatcatttattctccctcatgtgtttttaaacatttataattgtctttttttttttttttcttgaacacaaaagaagatattttgaagtatgcgacttccatagcaggaaaaagaAATGACTAtagcatacttcaaaatatcttcttttttgttcaacaaaagaaagacaatTATAAACGTTTAAGAACACATGAgagaaaaaaatgtcagaattttacattttaggtgaactatcaccTTTAAGTACATTATTTAATCTAACATCCTGCTGTGTCTGCTGACAAGTATTATAAAACTGGCTTCATTTTTGTGGGTTAAACATCATGGCACTTCCAGATCCCTGATGGCTGGTGTCCTAGAGGTTCTACTGTTTGAGGCGGATGGCAGATGCGAGACCGATCGGCTGCTTTATTGCTTATGGAGTGAGGCGTTTGGGATCACGAGGGAACATGGAGGTCTGGCGTACATTGTGTAGGCCGAGATAAAGCATGGTCACTCTTTCAAGACCTAAGAGATGAAAAAAGACATACAAGAGGTCGATTTAGCACTGAAATTACTCCAAATTTTATCGCTTAAAAGGGCTCCTTTGTTACTAAAACTATTCTACTAAGTTTCAAAAATGGCTGGTTTGGATTTGAGGAGATTTGTACGGATACCTGAAAGAGACGTGAtagtggtgaaaaaaaaacagagtaataggtaaacatatttttgaaagtttttgcattctctcgcaaagatgttttgcgttccctcgcaaaactgttgttcGACAAACACTTCACTTCATACATGACAATCCTCCCGTTTTTGCTGGGATTGTTCCGTATTTTACTATTATATCCtattattagatattttcccatatttcataattttaatcttgaaagtatactgaaattaatataaaaatgtcggcattcactttctttccattaaagctgtgcgtcaatCAGCACccctcatatgcaacctctgaatcagtgaatgcatgtataagcgctctGACAGCATGTATAAAAGGATTTAAAGCAGgacatcagcaaaaaaaaaaaaaaaaaaaagtaaaaattcatTGTAATCACTGATTATTCATCGATACAGTTTATGGAAATCAGGTAAGTGTCTGATGTACTGTAAACGTTTGAGCTACTGCCAACAACAGGGCAAGCGACAGAACAAAgggaaaaagtttaaaaagtttccaAAAAATTGATTCTAGCAAGTTTCAAAAATGGTTGGTTTAGATTTGAGGGGATTTGTGATGTCACAGAACCGGTTATATTTGCATAAGACTATCTTTAGAGCAAGACATCagcaaataattgttttattgaaCAATAGGCCATGCCTACTGGTGTTCAGTTACTTGATCTGACATACAGTAATAATGccaagttaaaaaataaacaaaaaagaaggcATTGTAACCACCGAGAGGGTCTGCATTGGATACAGTTTACAGAAATCATTTCAATTACTGATGTGCTGTAAATGTTTGAGCTACTGCAGACAACAAGACAACTGGCAGAATAAATGGAATCACTTAATTTATTTGGAGTTTAATCTTTCTTTGTtaaaagttggtgg

Function

symbol description
tmbim1b Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000109373

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073956 True 5822 mRNA 0.35 10 10758339 10769097

Neighbor

gene id symbol gene type direction distance location
XLOC_037662 thsd7ba coding downstream 225748 10152820 ~ 10532591 (-)
XLOC_037663 NA coding downstream 387714 10368380 ~ 10370625 (-)
XLOC_037661 hnmt coding downstream 612459 10138196 ~ 10145880 (-)
XLOC_037660 spopla coding downstream 690234 10050890 ~ 10068105 (-)
XLOC_037659 ugt1a1 coding downstream 754557 9969987 ~ 10003782 (-)
XLOC_037665 CABZ01053619.1 coding upstream 9130 10778227 ~ 10778615 (-)
XLOC_037666 si:ch1073-416j23.1 coding upstream 12590 10781687 ~ 10805231 (-)
XLOC_037667 BX000444.1 coding upstream 76821 10845918 ~ 10846549 (-)
XLOC_037668 chpfa coding upstream 476865 11245962 ~ 11263228 (-)
XLOC_037669 fev coding upstream 779136 11548233 ~ 11551704 (-)
XLOC_037651 AL954142.4 non-coding downstream 1387473 9355372 ~ 9370866 (-)
XLOC_037649 NA non-coding downstream 1469269 9286419 ~ 9289070 (-)
XLOC_037645 NA non-coding downstream 1707824 9026383 ~ 9050515 (-)
XLOC_037644 BX537313.1 non-coding downstream 1734070 9009123 ~ 9024269 (-)
XLOC_037671 NA non-coding upstream 802215 11571312 ~ 11572354 (-)
XLOC_037673 NA non-coding upstream 826890 11595987 ~ 11655031 (-)
XLOC_037675 NA non-coding upstream 1053282 11822379 ~ 11855305 (-)
XLOC_037677 NA non-coding upstream 1307746 12076843 ~ 12171785 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122351827 LOC107568346,LOC107676221,LOC566927,LOC107706103,LOC107706102,LOC108412955 misc NC_056707.1 CM032076.1 9156045 ~ 9160821 (+)
mexican tetra (Astyanax mexicanus) G75584 NA non-coding NC_035904.1 CM008307.1 21810540 ~ 21810761 (-)