XLOC_037993 (ildr2)


Basic Information

Item Value
gene id XLOC_037993
gene name ildr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 34274501 ~ 34300707 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074551
ATTCTGACCAGCGCAGCGGACAGAGATGAAGCGAATAACAGTCCGGGAGAAGATGGACTAGATGATTGCAAactaacccgcactaaactggaTCATGTTTTTGTTACACGCTTTTTGGATTCTATTCACACTATTTTCACTGCAAAGTTGTGATGGCGTACAGGTGGTCGTTAAAGATGAGAAGAAGTTTGCCATGCTGTTCTCCTCCATCGTTCTACCATGTCATTACACCACCCACTCCACTCAAACCGCTGTGGTGCAATGGTGGTACAAGTCCTACTGCACAGACCGCACTCGAGATTCCTTCACCTTTCCTGAGTCCCTGGGAGTCCATGTATCTGATCTGGGAGCATCGTCTCATCGGGACTGCTCAGACAACAGCCGCACGGTCCGCATAGTGGCCTCAGGACAGGGAGCTTCCATGACCTTAGCAGAGCACTACAAAGGAAGAGACATCTCCATCATTAACAAAGCAGATCTGCACATTGGACAGCTGCAGTGGGGCGACAGCGGTGTGTATTTCTGTAAGGTGATCATTTCTGATGACCTGGAAGGAAAAAATGAAGGCCAAGTTGAGCTGCTGGTGCAGGGTAGGACAGGTGTGCTGGATGACATCCTGCCTGAGTTTGATTTGGAGATTATGCCAGAGTGGGCATTTGTGGGAGTTGTGGTTGTTGGTAGCATCCTCTTCCTGTTGTTGGTTGGGATCTGCTGGTGCCAGTGTTGCCCTCACTCCTGTTGTTGTTATGTGCGCTGCTGCTGCTGTCCGGATACATGCTGCTGTCCAAAACATTTATATGAAGCAGGGAAGATGGCAAAGAGTGGCCAACCTCCTCAGATCACCATGTATCAACCTTACTACGTTCCCGGCGTTCCTGTAGTTCCTGTGGTTCCTCCAGCCGCATCATCTATCATTGAACCCAAGCTGCCTACAGTGCCTCCCTCAGTTGAAAACAATATAGCTGGAACAGCCGACAACCTATCAGAACTGAGCTCTCTGCATGATGGTGATGTAGACTTCAGACAAACCTATCGGCAGGTCCAGAGGAAAGCTCTGCCACCCATCATTGACCACCTAGATGAGCCGCGACTCCGAACAGCATCGATTGGCCATGGGCTTCGACCCTCACATTATCAGAGCGATCACTCTCTGGATGAGCATGACAACAGATGGAACTGTCGATCTGAGCACCTGCCTCGCAAAGCCTTTGACAGCAGGGGACGCACTGTGTCCCTGGATGAGCTGGAGGAGTTCGCCATGTCTTACGGCCCACACGGTCGTCGAAGAGGAGACATCCGTGGACCCCAGCGTGACTTTGAAATGGCTCCAAGGACAAGGGACCATCCCACATCATACCGTAATGGGCCTCGCTACCTTCGTGAGGATGATGATAGTGACTGGCATCGTCGAGGTTCGCCACCTTCCCCACCAAAAAGACGCGATACCGCCGACAGCGAGCGCTACGTTTCCCGCCAGAGGTCATACGATGATACATACCTAAACAGTCTACTGGAGCGCAAGGCAAGGGGCCACGGAGAGCGGGGTGGACGTGTTGACGATGACAGCGATACACCCTCGAAAGGGAGTTCCAAGAAGAGCAGCGACTGTTATCAGAGCAGGTCACCAAGCAATCGTCCTGAAGAGGAGGATCCTTTACCTCCATACTCTGAAAGAGAGGGGGAGAGATTTAGAACTGAAGAGCCCACAGGGAGGGAACGGTACAGGACTGCTGATCCTGCCATGAGGCCTTTTTCATACACACGTCCCCCTCACGGACTGTCCCAGACGCTACAAGAGCGCAGGGAGGACAGGGACAAACCCAGGAAACTGACCACTCATCTAAGCAGAGACTCTCTAATTGTGTGACGTCATCAGACTGAGCTGACATCATACTAATAACACCACCATCAAGCCGAAGAGAAATACCCAGACACTAATCATCAGTCAGTCAGCAAGACACATTTTATGCAGGATCACACAGACATGAAGAGCTTGGGAACTTTTGCTGGTCAAGGGCAAGACGTAGCGTTTGTGTGtgcgttttattttttatattgttcaattatatcAGAAGATCTAATCAATCTTCATCAGTCCTTAGATTGCAGCTGCACTTAATTATGTCAAAAGGACACGTTCAAATGATTATCAAGTGCTCTAAACATTCCTTGATGTTTTGTTTATCCTCAGTACTGTATTGAGACACTGTCTCGGATTTCATTATTGCCATTGCCTTTGCAtgcactgtactgtacatttgTGTCAGTGTTATTAAGTTGGCTCTCAAGGGAAGCATAAATGTTGATAATGTGCCATTTATTTGTACTgcgcagttttaaaatgattttgatatGAA
>TCONS_00074552
TGCAAAGTTGTGATGGCGTACAGGTGGTCGTTAAAGATGAGAAGAAGTTTGCCATGCTGTTCTCCTCCATCGTTCTACCATGTCATTACACCACCCACTCCACTCAAACCGCTGTGGTGCAATGGTGGTACAAGTCCTACTGCACAGACCGCACTCGAGATTCCTTCACCTTTCCTGAGTCCCTGGGAGTCCATGTATCTGATCTGGGAGCATCGTCTCATCGGGACTGCTCAGACAACAGCCGCACGGTCCGCATAGTGGCCTCAGGACAGGGAGCTTCCATGACCTTAGCAGAGCACTACAAAGGAAGAGACATCTCCATCATTAACAAAGCAGATCTGCACATTGGACAGCTGCAGTGGGGCGACAGCGGTGTGTATTTCTGTAAGGTGATCATTTCTGATGACCTGGAAGGAAAAAATGAAGGCCAAGTTGAGCTGCTGGTGCAGGGTAGGACAGGTGTGCTGGATGACATCCTGCCTGAGTTTGATTTGGAGATTATGCCAGAGTGGGCATTTGTGGGAGTTGTGGTTGTTGGTAGCATCCTCTTCCTGTTGTTGGTTGGGATCTGCTGGTGCCAGTGTTGCCCTCACTCCTGTTGTTGTTATGTGCGCTGCTGCTGCTGTCCGGATACATGCTGCTGTCCAAAACATTTATATGAAGCAGGGAAGATGGCAAAGAGTGGCCAACCTCCTCAGATCACCATGTATCAACCTTACTACGTTCCCGGCGTTCCTGTAGTTCCTGTGGTTCCTCCAGCCGCATCATCTATCATTGAACCCAAGCTGCCTACAGTGCCTCCCTCAGTTGAAAACAATATAGCTGGAATGCGCAGTGGCTATCGACTCCAAGCCAGTCAGGGTCAGGACGCTATGAAGGTTGTGTACTACCTAGAGAGGGACCTGGCACAATTCCACCCTACCAAGGGGGCCAGTCATCCATCAGCCGACAACCTATCAGAACTGAGCTCTCTGCATGATGGTGATGTAGACTTCAGACAAACCTATCGGCAGGTCCAGAGGAAAGCTCTGCCACCCATCATTGACCACCTAGATGAGCCGCGACTCCGAACAGCATCGATTGGCCATGGGCTTCGACCCTCACATTATCAGAGCGATCACTCTCTGGATGAGCATGACAACAGATGGAACTGTCGATCTGAGCACCTGCCTCGCAAAGCCTTTGACAGCAGGGGACGCACTGTGTCCCTGGATGAGCTGGAGGAGTTCGCCATGTCTTACGGCCCACACGGTCGTCGAAGAGGAGACATCCGTGGACCCCAGCGTGACTTTGAAATGGCTCCAAGGACAAGGGACCATCCCACATCATACCGTAATGGGCCTCGCTACCTTCGTGAGGATGATGATAGTGACTGGCATCGTCGAGGTTCGCCACCTTCCCCACCAAAAAGACGCGATACCGCCGACAGCGAGCGCTACGTTTCCCGCCAGAGGTCATACGATGATACATACCTAAACAGTCTACTGGAGCGCAAGGCAAGGGGCCACGGAGAGCGGGGTGGACGTGTTGACGATGACAGCGATACACCCTCGAAAGGGAGTTCCAAGAAGAGCAGCGACTGTTATCAGAGCAGGTCACCAAGCAATCGTCCTGAAGAGGAGGATCCTTTACCTCCATACTCTGAAAGAGAGGGGGAGAGATTTAGAACTGAAGAGCCCACAGGGAGGGAACGGTACAGGACTGCTGATCCTGCCATGAGGCCTTTTTCATACACACGTCCCCCTCACGGACTGTCCCAGACGCTACAAGAGCGCAGGGAGGACAGGGACAAACCCAGGAAACTG

Function

symbol description
ildr2 Acts upstream of or within endoderm development and pancreas development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood vessel; intestine; nervous system; optic vesicle; and ventral mesoderm. Orthologous to human ILDR2 (immunoglobulin like domain containing receptor 2).

GO:

id name namespace
GO:0007492 endoderm development biological_process
GO:0031016 pancreas development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050706-83 Acts upstream of or within endoderm development and pancreas development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including blood vessel; intestine; nervous system; optic vesicle; and ventral mesoderm. Orthologous to human ILDR2 (immunoglobulin like domain containing receptor 2).

Ensembl:

ensembl_id ENSDARG00000014180

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074551 False 2357 mRNA 0.49 9 34274501 34300707
TCONS_00074552 True 1805 mRNA 0.53 8 34277283 34296406

Neighbor

gene id symbol gene type direction distance location
XLOC_037992 ildr1b coding downstream 5435 34260604 ~ 34269066 (-)
XLOC_037991 me3 coding downstream 14287 34246384 ~ 34260214 (-)
XLOC_037990 dcaf6 coding downstream 55136 34166064 ~ 34219365 (-)
XLOC_037989 slc35a5 coding downstream 152662 34112067 ~ 34121839 (-)
XLOC_037988 NA coding downstream 191275 34069736 ~ 34083226 (-)
XLOC_037994 gpa33b coding upstream 6433 34307140 ~ 34308113 (-)
XLOC_037995 BX294189.1 coding upstream 25723 34326430 ~ 34328502 (-)
XLOC_037996 NA coding upstream 49810 34350517 ~ 34355550 (-)
XLOC_037997 cd247l coding upstream 56188 34356895 ~ 34368842 (-)
XLOC_037998 grtp1b coding upstream 89269 34389976 ~ 34396264 (-)
XLOC_037987 NA non-coding downstream 208895 34064509 ~ 34065606 (-)
XLOC_037985 dre-mir-222a non-coding downstream 318562 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding downstream 331365 33942193 ~ 33943136 (-)
XLOC_037984 dre-mir-221 non-coding downstream 353477 33920932 ~ 33921024 (-)
XLOC_038000 NA non-coding upstream 245959 34546666 ~ 34587807 (-)
XLOC_038001 NA non-coding upstream 291319 34592026 ~ 34812883 (-)
XLOC_038002 BX601644.5 non-coding upstream 452337 34753044 ~ 34753159 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_03244366_03259106 ILDR2 coding CI01000009 null 3243598 ~ 3259106 (-)