Fish Transcriptome and Expression Database

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model fish

XLOC_037984 (dre-mir-221)

Basic Information

Item	Value
gene id	XLOC_037984
gene name	dre-mir-221
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007120.7
NCBI id	CM002893.2
chromosome length	56459846
location	33920932 ~ 33921024 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074543
GTCGTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACTATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCAGCAGAATAATTCTGCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000091272

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00074543	True	93	miRNA	0.45	1	33920932	33921024

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_037983	dipk2b	coding	downstream	43418	33863523 ~ 33877514 (-)
XLOC_037982	fundc1	coding	downstream	135732	33783549 ~ 33785200 (-)
XLOC_037981	efhc2	coding	downstream	139081	33758720 ~ 33781851 (-)
XLOC_037980	ndp	coding	downstream	171376	33734850 ~ 33749556 (-)
XLOC_037979	mao	coding	downstream	194960	33660964 ~ 33725972 (-)
XLOC_037985	dre-mir-222a	coding	upstream	440	33921464 ~ 33955939 (-)
XLOC_037986	NA	coding	upstream	21169	33942193 ~ 33943136 (-)
XLOC_037987	NA	coding	upstream	143485	34064509 ~ 34065606 (-)
XLOC_037988	NA	coding	upstream	148712	34069736 ~ 34083226 (-)
XLOC_037989	slc35a5	coding	upstream	191043	34112067 ~ 34121839 (-)
XLOC_037977	NA	non-coding	downstream	561888	33356651 ~ 33359044 (-)
XLOC_037975	BX545856.1	non-coding	downstream	669926	33247202 ~ 33251006 (-)
XLOC_037974	NA	non-coding	downstream	718028	33201515 ~ 33202904 (-)
XLOC_037973	NA	non-coding	downstream	741916	33177648 ~ 33179016 (-)
XLOC_037970	NA	non-coding	downstream	798818	33110204 ~ 33122114 (-)
XLOC_037995	BX294189.1	non-coding	upstream	405406	34326430 ~ 34328502 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
rainbow trout (Oncorhynchus mykiss)	G150576	NA	non-coding	NC_048566.1	CM023220.2	47365665 ~ 47366117 (+)
rainbow trout (Oncorhynchus mykiss)	G1772992	NA	non-coding	NC_048586.1	CM023240.2	9877812 ~ 9878249 (+)