XLOC_037977


Basic Information

Item Value
gene id XLOC_037977
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33356651 ~ 33359044 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075398
CAAGCCCACAGGGACAGGGCATGAGGAGGGAGGAGGAGGAAATACACTGGGGAAAAAACAGAACGTAGATGTGTTAGATCAGGAGTAGGCAATGCTGGAGTTAAACTCCAAACCTGATCAAACTTGCTTTCCTGTAGATTTCTAGTCATGGCACAGATTTTAACTAGCTTGTGAAGGTTATTTAATTAGCAAAACTCTGAGAGCAAAGAGCAAGGTTAGACCtgctggagatctacctttctgcaaAGCTCAATCCTGATCAAACAGACCTGAGTGTTGAGGAATACAGATTGTGATGATTACAGGGACTGAACTCTGCTGGTAtgtggatctccaggaacaggattgagcaccctattgtgcatttttttatgtgtGGGTTAAAAAACAGGAATTATGCTGTGTTCATTGTTATaccaaaaacatttacatttgcaataaaaaaaaaaaaaaactttaaaaaaacacattaagagaaaaactaaattaataactttgagggaaaaaaaactagCTTGAGCACATTTAACTAAGACTATATGTGAACTGAACCAGAGGCggacttagtgatttgggggtcctaagcaattccaggtatggggttttaaaaataagtaataacgtTTAAATCCTAATGGTTATAGAAAGATTTGCTCGAAATGGCATATGATAGAACATTTATGAAAGAGCTACATGATTGATGTAGACTGCTTGGCATTGGTTGGTGCCCCCTAAttccctattttttttttttttttttttggcagttatttgtatttttgtgacACACCTTATATCATTTGGTCAATTTTAGCCACAATGAGGTTTTGTGGTTTATTGAGAAACAATCTAAATCAATGAACAGGCATTCTCTTTTCATGTAACTCATTATCAGTTAATTTAGATCTTTTATTAAcccttaaaaacataaaaacataaagctTACAGATTTTGTATCAGATCTACAGTGTAAAACccaagtcaactttatcaaatgaaacaaATTGACTGAAACTTAATTCTACACATTTGAAAAGAGGTTGGATGTCAGTGTTGAGGGTAATGAGgtaattaaatatctcattagttcaacttaaatggagtaagttcacagtactcaaatagattcattttttaactcaaatagtttgttcTAATCAGTTTCCTCCaactgtttgagttgccttaacttgttTGGGTTTTGCAGTACTCAGTTGTTTTGAGTTCTCTtcctttattgggttttactgggctcaaattgcttcatttactcaaatggattaagttcacagtactcattaggaaaAGTTTTTGagcttaaatgatttgttgcaatcggtttcctcaaatgcttttagttaccttaacttattgggttttgcaGTGTAGGGTAGCATAGCCCAGGTTCAAACACTGACAGTAAATGTGTTCAGGTTTAAAAAGTAAGCAGTGTATTCACATCACATTGAACTTTAAACAGCCACAATGATGCATCTGTGTTAAATAGCACAGCATTGGTTTCCACTGGAAGTATGTGGTCTATTGCAGAGAATTGATGAGATTTATTCCTGTAATGAACTTTACAAAGGAACTACCAGAACTCTATTATAATGATAGAGAAAACGCTAGCCATGCAGCATAAGCAGTCACTTTGCAAATGAGTCGTGCTCGTTCTCCCAGCAGTTATGGGAAGATTACAGAGAACACAATCACAGACTGGAGGAATAATTTAATGTGTGGCCTCCCTCTGTTCTGCACATTAAACTTATGTTGATTAGAAAAGAGCAGATTAGAAATCACACAAAAACACTAGGTCTTGTTTGTTCCCGGACCTCCTATTAGTAGAGATGCTGTACAGTAAATTGATTACATTCTTTAATACGATGTTCTTATTGAGATCAGCTgaattgaagtttttttttttttttttgcagttataagATCAGTCAGTCATGTCATGGAAATACAACAAACCTTTAGCATCAAAACAGCAGGAATCATGTACTTACCGGCAATATTGATGATGAAACACATCACTGGCTTCTCTCAGCTGTGATTATTTAGCAGGACCTGCCGATCATCTTCAGTAAAGTTTCTCCTGGACACACAGTGCACCGAAGTAAATCCGTCAGTTCAGCCAACATGCCTATGTCTGTACCACATCGCTCCAAGTGGAAATATGAATGGATTAAAGGTGCCATCAGTCAGTTTGTGCTTTTCTCTGCACACATCAGCACTCCCCTTCAGAAAGCCATCACTTAATGGCAGAAAAATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075398 True 2276 lncRNA 0.36 2 33356651 33359044

Neighbor

gene id symbol gene type direction distance location
XLOC_037976 rpl8 coding downstream 26864 33323104 ~ 33329787 (-)
XLOC_037975 BX545856.1 coding downstream 105645 33247202 ~ 33251006 (-)
XLOC_037974 NA coding downstream 153747 33201515 ~ 33202904 (-)
XLOC_037973 NA coding downstream 177635 33177648 ~ 33179016 (-)
XLOC_037972 slc5a3b coding downstream 219661 33134882 ~ 33136990 (-)
XLOC_037978 caska coding upstream 7639 33366683 ~ 33608427 (-)
XLOC_037979 mao coding upstream 301920 33660964 ~ 33725972 (-)
XLOC_037980 ndp coding upstream 375806 33734850 ~ 33749556 (-)
XLOC_037981 efhc2 coding upstream 399676 33758720 ~ 33781851 (-)
XLOC_037982 fundc1 coding upstream 424505 33783549 ~ 33785200 (-)
XLOC_037970 NA non-coding downstream 234537 33110204 ~ 33122114 (-)
XLOC_037966 NA non-coding downstream 415423 32937829 ~ 32941228 (-)
XLOC_037984 dre-mir-221 non-coding upstream 561888 33920932 ~ 33921024 (-)
XLOC_037985 dre-mir-222a non-coding upstream 562420 33921464 ~ 33955939 (-)
XLOC_037986 NA non-coding upstream 583149 33942193 ~ 33943136 (-)
XLOC_037987 NA non-coding upstream 705465 34064509 ~ 34065606 (-)
XLOC_037988 NA non-coding upstream 710692 34069736 ~ 34083226 (-)

Expression


Co-expression Network