Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_037980 |
| gene name | ndp |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 33734850 ~ 33749556 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| ndp | Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP). |
| id | name | namespace |
|---|---|---|
| GO:0061298 | retina vasculature development in camera-type eye | biological_process |
| GO:0016055 | Wnt signaling pathway | biological_process |
| GO:0031012 | extracellular matrix | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005125 | cytokine activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060216-2 | Predicted to enable cytokine activity. Acts upstream of or within retina vasculature development in camera-type eye. Predicted to be located in extracellular space. Predicted to be active in extracellular matrix. Human ortholog(s) of this gene implicated in Norrie disease; X-linked exudative vitreoretinopathy 2; and retinopathy of prematurity. Orthologous to human NDP (norrin cystine knot growth factor NDP). |
| ensembl_id | ENSDARG00000076569 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00074532 | False | 811 | mRNA | 0.48 | 3 | 33734850 | 33749556 |
| TCONS_00074533 | True | 417 | mRNA | 0.51 | 2 | 33734968 | 33741629 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_037979 | mao | coding | downstream | 8878 | 33660964 ~ 33725972 (-) |
| XLOC_037978 | caska | coding | downstream | 126423 | 33366683 ~ 33608427 (-) |
| XLOC_037977 | NA | coding | downstream | 375806 | 33356651 ~ 33359044 (-) |
| XLOC_037976 | rpl8 | coding | downstream | 405063 | 33323104 ~ 33329787 (-) |
| XLOC_037975 | BX545856.1 | coding | downstream | 483844 | 33247202 ~ 33251006 (-) |
| XLOC_037981 | efhc2 | coding | upstream | 9164 | 33758720 ~ 33781851 (-) |
| XLOC_037982 | fundc1 | coding | upstream | 33993 | 33783549 ~ 33785200 (-) |
| XLOC_037983 | dipk2b | coding | upstream | 113967 | 33863523 ~ 33877514 (-) |
| XLOC_037984 | dre-mir-221 | coding | upstream | 171376 | 33920932 ~ 33921024 (-) |
| XLOC_037985 | dre-mir-222a | coding | upstream | 171908 | 33921464 ~ 33955939 (-) |
| XLOC_037974 | NA | non-coding | downstream | 531946 | 33201515 ~ 33202904 (-) |
| XLOC_037973 | NA | non-coding | downstream | 555834 | 33177648 ~ 33179016 (-) |
| XLOC_037970 | NA | non-coding | downstream | 612736 | 33110204 ~ 33122114 (-) |
| XLOC_037986 | NA | non-coding | upstream | 192637 | 33942193 ~ 33943136 (-) |
| XLOC_037987 | NA | non-coding | upstream | 314953 | 34064509 ~ 34065606 (-) |
| XLOC_037988 | NA | non-coding | upstream | 320180 | 34069736 ~ 34083226 (-) |
