LOC110505846 (LOC106603641)


Basic Information

Item Value
gene id LOC110505846
gene name LOC106603641
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36314846 ~ 36322426 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962842.1
gatggggggggggggcggcccGTTACTAACCACTGCACCGCGCAGGAGCTCTGGCAACAACCACAACGGAGGATTGGAGCATAGCAATACTGCCAGCGAAATAACAACAGAGAAAGATAGCTGTCTGAATACAAGGATGGCAGTGAATGTGCACGCTACGTCTGTGTCCTGTGACACCCTGAGCCGACATGACATGCTGGCCTGGCTCAACGACTCCCTGCACCTCACCTACACCAAGATAGAACAGCTCTGCTCGGGGGCAGCGTACTGTCAGTTCATGGACATGCTGTTTCCAGGCTGTGTCCTTCTAAAGAAGGTCAAGTTCCAGGCCAAGCTGGAACACGAGTTCATACACAACTTCAAGGTTCTCCAGGCTGCCTTCAAGAGGATGGGCGTTGACAAAATAATTCCCGTGGAGAAGCTGGTAAAAGGGAAGTTCCAGGATAACTTTGAGTTCGTGCAGTGGTTCAAGAAATTCTTTGACGCCAACTATGATGGGAAGGAGTATGACCCGCTACAGGCCAGACAGGGACAAGATGTGAACCCCGCCCCCAATCCAGGTGATCACTTTTCCCACAGACCAAAGAGAACTCATGGCCCTGCAGGCCCCCAGAGGCACTCGCCCACAGTGCCCAAGATCCTACCCACGCCCCAGAGGGTGCTGAACACTACTGTGCATGTGAGAAAGGCCCCGGCCCTGACGCGGAACGGGGGAACTGACGCGGAACTCTTGGAGCTAAATCAACAGTTGATGGAGCTGAAGTTAACGGTGGACGgactagagaaggagagagatttCTACTTCAGTAAGCTGAGAGACATTGAGCTGATCTGTCAGGAACACGAGAGTGACACCAACCCTCACCTATCCAGGATCATGGACATTCTCTACGCCACAGAGGACGGCTTTGCTGCTCCAGATGATGACGAGATTGATGGACAGGCCCACTTGGACCAGGATGAATACTGAGTCTCTAATAGCTTCTGTCTAttcacatccccctctccctcctcttaaaACTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctcccttctctaatAGCTTCTGTCTATTCACATCCCCCCTAATACCTTCTGTCTATtcacatctccctctccctcctctaaacCCTTCTGTCTATCcacatcccccccctctctctctctctctctctctctctttctctctctctctctctctctgcctctctttgcctctccctctcttttgccCCTCTCTTGTACTTGTTCTATCTCTtttcatatgtatatatgtgtgtctcctccttccccctctgcaatgtactgtacatacaccaCTACATCTCATAAGCTACCCCTCGCTCCCTCCCCAATGACACAGTAGCAGCAACAATAACAGAACATATCCTAGTCGTTCCAGCATGGTACATAGTAACACAGAATAATGACCCAAACCAAGGTGATATTAATGGGGGTGTTAGGCCTGCACAATTCATTCAGAGTTGTAAATATGACAAAAAAGGAAAGATTTTGAAATAAGGTAGATGTCTGAAtgcatttgtttgtttgtcttttGGTTTGACTCACGCTTTTTCTAAAACTCATTTTGGTTCTATTCCGGAGTGTAGAAAGCACCTTGTGCATGTTATTGTATTACAGGGTACCACAAGAGTCCCAAAATAGACTAACAAAATCACCTACGACAACAAATTATATTTAATTCGTTTTTACTTTCTTATTTATTGATTTGGATTTTAACTACTATCGGTACAATAATTGGtgcaaaatgtatgtaaattaaaCAATACTATAGCGTATGCTCATGGTAGTGAAAAGGCTTAAGCTTTTTGTTTCAGTTGATGGCATGTAGTAACGTCAAGGGAAAATTCATAACAGAAAGTGGTCCAGAAATAATCATTTAGGTATAGGAGATGACCAATGCTCTTTGACTGTACTCATTCTGGATTAGCTGTATTTGAACATGAGAATGTCATAAATTAACAGGGAATGGGCGATATATTCATAAACTAATTTATGTGGAGATATTATGTTCAAATAGAAGTGTCTGGGTACATGCCACGGTATTTATTATGTATAATGAGTTTAACATTCATTTGGTATTAACAATACCTGAGTTACTATGTAGGCTGACTATGGCAGCaaattgtttttttaatttaactgtaaaaatgtgttgtttttaaaagagcctgaaaacaatgatttACTTTGATTTGATCATATTACGTTTCTGCTGCTAATTTTGCTGTGTTTCTACTTTTTGCTATAACATATTGCTCAGCTGTAATGAGTCGTCTTACTAATTTCATGTTTGAGTTTAGAGAACGAGGAAGTCAGGAGGTTGCGTCCCAAATCAAGTTTAAGTTTtagtacagtgaaatacttaactTGTGTGCTgtacccaacagtgcagtaatcaaAATATATGAAAACACTAAGAAATAAgagaggaagctatatacagggtcagtgctaATACCAAatgtacaatgtgcagggattcttgagtatttgaggtagatatgtacatatactgtaggcaGGGAATAggagaaagtgactggtagcTGGATAAAGAATAATAATATATCAAAAGTAGAGTcctaaatagggaatagtgtgccgtttggGATGGACTGAGTTAGTTAGGGGTCTATGACCAGTTCAAAATGATGCTGGTCATCATGAGCATCATAAGGAATAGAACTCATTTGCCCCTGTACTACTGCCTTGTCAATGCAAACCTACAGCCATCTGCAATAGAATCTGACCTGCATTCTCTCACGTGCTCTGGCTGTCTGCATAACTCTCATCTCTGAGTTTTATTGAGTAAATAAACAAACGATTGTGAAATAAACTGTTACAATACTG
>XM_036962843.1
gatggggggggggggcggcccGTTACTAACCACTGCACCGCGCAGGAGCTCTGGCAACAACCACAACGGAGGATTGGAGCATAGCAATACTGCCAGCGAAATAACAACAGAGAAAGATAGCTGTCTGAATACAAGGATGGCAGTGAATGTGCACGCTACGTCTGTGTCCTGTGACACCCTGAGCCGACATGACATGCTGGCCTGGCTCAACGACTCCCTGCACCTCACCTACACCAAGATAGAACAGCTCTGCTCGGGGGCAGCGTACTGTCAGTTCATGGACATGCTGTTTCCAGGCTGTGTCCTTCTAAAGAAGGTCAAGTTCCAGGCCAAGCTGGAACACGAGTTCATACACAACTTCAAGGTTCTCCAGGCTGCCTTCAAGAGGATGGGCGTTGACAAAATAATTCCCGTGGAGAAGCTGGTAAAAGGGAAGTTCCAGGATAACTTTGAGTTCGTGCAGTGGTTCAAGAAATTCTTTGACGCCAACTATGATGGGAAGGAGTATGACCCGCTACAGGCCAGACAGGGACAAGATGTGAACCCCGCCCCCAATCCAGGCCCCCAGAGGCACTCGCCCACAGTGCCCAAGATCCTACCCACGCCCCAGAGGGTGCTGAACACTACTGTGCATGTGAGAAAGGCCCCGGCCCTGACGCGGAACGGGGGAACTGACGCGGAACTCTTGGAGCTAAATCAACAGTTGATGGAGCTGAAGTTAACGGTGGACGgactagagaaggagagagatttCTACTTCAGTAAGCTGAGAGACATTGAGCTGATCTGTCAGGAACACGAGAGTGACACCAACCCTCACCTATCCAGGATCATGGACATTCTCTACGCCACAGAGGACGGCTTTGCTGCTCCAGATGATGACGAGATTGATGGACAGGCCCACTTGGACCAGGATGAATACTGAGTCTCTAATAGCTTCTGTCTAttcacatccccctctccctcctcttaaaACTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctcccttctctaatAGCTTCTGTCTATTCACATCCCCCCTAATACCTTCTGTCTATtcacatctccctctccctcctctaaacCCTTCTGTCTATCcacatcccccccctctctctctctctctctctctctctttctctctctctctctctctctgcctctctttgcctctccctctcttttgccCCTCTCTTGTACTTGTTCTATCTCTtttcatatgtatatatgtgtgtctcctccttccccctctgcaatgtactgtacatacaccaCTACATCTCATAAGCTACCCCTCGCTCCCTCCCCAATGACACAGTAGCAGCAACAATAACAGAACATATCCTAGTCGTTCCAGCATGGTACATAGTAACACAGAATAATGACCCAAACCAAGGTGATATTAATGGGGGTGTTAGGCCTGCACAATTCATTCAGAGTTGTAAATATGACAAAAAAGGAAAGATTTTGAAATAAGGTAGATGTCTGAAtgcatttgtttgtttgtcttttGGTTTGACTCACGCTTTTTCTAAAACTCATTTTGGTTCTATTCCGGAGTGTAGAAAGCACCTTGTGCATGTTATTGTATTACAGGGTACCACAAGAGTCCCAAAATAGACTAACAAAATCACCTACGACAACAAATTATATTTAATTCGTTTTTACTTTCTTATTTATTGATTTGGATTTTAACTACTATCGGTACAATAATTGGtgcaaaatgtatgtaaattaaaCAATACTATAGCGTATGCTCATGGTAGTGAAAAGGCTTAAGCTTTTTGTTTCAGTTGATGGCATGTAGTAACGTCAAGGGAAAATTCATAACAGAAAGTGGTCCAGAAATAATCATTTAGGTATAGGAGATGACCAATGCTCTTTGACTGTACTCATTCTGGATTAGCTGTATTTGAACATGAGAATGTCATAAATTAACAGGGAATGGGCGATATATTCATAAACTAATTTATGTGGAGATATTATGTTCAAATAGAAGTGTCTGGGTACATGCCACGGTATTTATTATGTATAATGAGTTTAACATTCATTTGGTATTAACAATACCTGAGTTACTATGTAGGCTGACTATGGCAGCaaattgtttttttaatttaactgtaaaaatgtgttgtttttaaaagagcctgaaaacaatgatttACTTTGATTTGATCATATTACGTTTCTGCTGCTAATTTTGCTGTGTTTCTACTTTTTGCTATAACATATTGCTCAGCTGTAATGAGTCGTCTTACTAATTTCATGTTTGAGTTTAGAGAACGAGGAAGTCAGGAGGTTGCGTCCCAAATCAAGTTTAAGTTTtagtacagtgaaatacttaactTGTGTGCTgtacccaacagtgcagtaatcaaAATATATGAAAACACTAAGAAATAAgagaggaagctatatacagggtcagtgctaATACCAAatgtacaatgtgcagggattcttgagtatttgaggtagatatgtacatatactgtaggcaGGGAATAggagaaagtgactggtagcTGGATAAAGAATAATAATATATCAAAAGTAGAGTcctaaatagggaatagtgtgccgtttggGATGGACTGAGTTAGTTAGGGGTCTATGACCAGTTCAAAATGATGCTGGTCATCATGAGCATCATAAGGAATAGAACTCATTTGCCCCTGTACTACTGCCTTGTCAATGCAAACCTACAGCCATCTGCAATAGAATCTGACCTGCATTCTCTCACGTGCTCTGGCTGTCTGCATAACTCTCATCTCTGAGTTTTATTGAGTAAATAAACAAACGATTGTGAAATAAACTGTTACAATACTG
>XM_036962844.1
ctgtgtgtgtgtctattcggGGAGGCCTGCAGAGGGGGTCCGGGCGACCGTTTGGATAGCCTAGCAACTAACATTGCAGGGTTTTGTTTCTTTGCACCAAATGCAAATTGGACAAATGTATTGTTCTCTGGGTATGCAATAAATAGCACATTTCCGCGTTTAAAACCCAGAGGATGGCAGTGAATGTGCACGCTACGTCTGTGTCCTGTGACACCCTGAGCCGACATGACATGCTGGCCTGGCTCAACGACTCCCTGCACCTCACCTACACCAAGATAGAACAGCTCTGCTCGGGGGCAGCGTACTGTCAGTTCATGGACATGCTGTTTCCAGGCTGTGTCCTTCTAAAGAAGGTCAAGTTCCAGGCCAAGCTGGAACACGAGTTCATACACAACTTCAAGGTTCTCCAGGCTGCCTTCAAGAGGATGGGCGTTGACAAAATAATTCCCGTGGAGAAGCTGGTAAAAGGGAAGTTCCAGGATAACTTTGAGTTCGTGCAGTGGTTCAAGAAATTCTTTGACGCCAACTATGATGGGAAGGAGTATGACCCGCTACAGGCCAGACAGGGACAAGATGTGAACCCCGCCCCCAATCCAGGTGATCACTTTTCCCACAGACCAAAGAGAACTCATGGCCCTGCAGGCCCCCAGAGGCACTCGCCCACAGTGCCCAAGATCCTACCCACGCCCCAGAGGGTGCTGAACACTACTGTGCATGTGAGAAAGGCCCCGGCCCTGACGCGGAACGGGGGAACTGACGCGGAACTCTTGGAGCTAAATCAACAGTTGATGGAGCTGAAGTTAACGGTGGACGgactagagaaggagagagatttCTACTTCAGTAAGCTGAGAGACATTGAGCTGATCTGTCAGGAACACGAGAGTGACACCAACCCTCACCTATCCAGGATCATGGACATTCTCTACGCCACAGAGGACGGCTTTGCTGCTCCAGATGATGACGAGATTGATGGACAGGCCCACTTGGACCAGGATGAATACTGAGTCTCTAATAGCTTCTGTCTAttcacatccccctctccctcctcttaaaACTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctccctcctctaataGCTTCTGTCTAttcacatccccctctcccttctctaatAGCTTCTGTCTATTCACATCCCCCCTAATACCTTCTGTCTATtcacatctccctctccctcctctaaacCCTTCTGTCTATCcacatcccccccctctctctctctctctctctctctctttctctctctctctctctctctgcctctctttgcctctccctctcttttgccCCTCTCTTGTACTTGTTCTATCTCTtttcatatgtatatatgtgtgtctcctccttccccctctgcaatgtactgtacatacaccaCTACATCTCATAAGCTACCCCTCGCTCCCTCCCCAATGACACAGTAGCAGCAACAATAACAGAACATATCCTAGTCGTTCCAGCATGGTACATAGTAACACAGAATAATGACCCAAACCAAGGTGATATTAATGGGGGTGTTAGGCCTGCACAATTCATTCAGAGTTGTAAATATGACAAAAAAGGAAAGATTTTGAAATAAGGTAGATGTCTGAAtgcatttgtttgtttgtcttttGGTTTGACTCACGCTTTTTCTAAAACTCATTTTGGTTCTATTCCGGAGTGTAGAAAGCACCTTGTGCATGTTATTGTATTACAGGGTACCACAAGAGTCCCAAAATAGACTAACAAAATCACCTACGACAACAAATTATATTTAATTCGTTTTTACTTTCTTATTTATTGATTTGGATTTTAACTACTATCGGTACAATAATTGGtgcaaaatgtatgtaaattaaaCAATACTATAGCGTATGCTCATGGTAGTGAAAAGGCTTAAGCTTTTTGTTTCAGTTGATGGCATGTAGTAACGTCAAGGGAAAATTCATAACAGAAAGTGGTCCAGAAATAATCATTTAGGTATAGGAGATGACCAATGCTCTTTGACTGTACTCATTCTGGATTAGCTGTATTTGAACATGAGAATGTCATAAATTAACAGGGAATGGGCGATATATTCATAAACTAATTTATGTGGAGATATTATGTTCAAATAGAAGTGTCTGGGTACATGCCACGGTATTTATTATGTATAATGAGTTTAACATTCATTTGGTATTAACAATACCTGAGTTACTATGTAGGCTGACTATGGCAGCaaattgtttttttaatttaactgtaaaaatgtgttgtttttaaaagagcctgaaaacaatgatttACTTTGATTTGATCATATTACGTTTCTGCTGCTAATTTTGCTGTGTTTCTACTTTTTGCTATAACATATTGCTCAGCTGTAATGAGTCGTCTTACTAATTTCATGTTTGAGTTTAGAGAACGAGGAAGTCAGGAGGTTGCGTCCCAAATCAAGTTTAAGTTTtagtacagtgaaatacttaactTGTGTGCTgtacccaacagtgcagtaatcaaAATATATGAAAACACTAAGAAATAAgagaggaagctatatacagggtcagtgctaATACCAAatgtacaatgtgcagggattcttgagtatttgaggtagatatgtacatatactgtaggcaGGGAATAggagaaagtgactggtagcTGGATAAAGAATAATAATATATCAAAAGTAGAGTcctaaatagggaatagtgtgccgtttggGATGGACTGAGTTAGTTAGGGGTCTATGACCAGTTCAAAATGATGCTGGTCATCATGAGCATCATAAGGAATAGAACTCATTTGCCCCTGTACTACTGCCTTGTCAATGCAAACCTACAGCCATCTGCAATAGAATCTGACCTGCATTCTCTCACGTGCTCTGGCTGTCTGCATAACTCTCATCTCTGAGTTTTATTGAGTAAATAAACAAACGATTGTGAAATAAACTGTTACAATACTG

Function

NR:

description
microtubule-associated protein RP/EB family member 3-like isoform X1

GO: NA

KEGG:

id description
K10436 MAPRE; microtubule-associated protein, RP/EB family

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962842.1 False 3026 mRNA 0.43 7 36314846 36322426
XM_036962843.1 False 2981 mRNA 0.43 7 36314846 36322426
XM_036962844.1 True 3063 mRNA 0.43 7 36315134 36322426

Neighbor

gene id symbol gene type direction distance location
LOC110505845 dpyl5 coding upstream 408 36293703 ~ 36314438 (+)
LOC110505844 LOC106611330 coding upstream 32708 36222621 ~ 36282138 (+)
LOC110505843 LOC106611333 coding upstream 102101 36151415 ~ 36212745 (+)
LOC110505839 LOC106611331 coding upstream 164243 36120390 ~ 36150603 (+)
LOC110505840 LOC106611332 coding upstream 194590 36112357 ~ 36120256 (+)
trnaa-agc-9 NA coding downstream 1447 36323873 ~ 36323945 (+)
LOC110505847 LOC106611313 coding downstream 53794 36376220 ~ 36824709 (+)
LOC110505849 LOC106611312 coding downstream 83085 36405511 ~ 36415323 (+)
LOC110504238 LOC106611323 coding downstream 126833 36449259 ~ 36631052 (+)
rmnd1 LOC106611322 coding downstream 323134 36645560 ~ 36655878 (+)
G1978181 NA non-coding upstream 93738 36220756 ~ 36221108 (+)
G1978081 NA non-coding upstream 286204 36028113 ~ 36028642 (+)
G1978079 NA non-coding upstream 289808 36021808 ~ 36025038 (+)
G1978102 NA non-coding upstream 294559 36016262 ~ 36020287 (+)
G1978101 NA non-coding upstream 294887 36015942 ~ 36019959 (+)
G1978249 NA non-coding downstream 37278 36359704 ~ 36359947 (+)
G1978280 LOC106611324 non-coding downstream 111711 36434137 ~ 36434672 (+)
G1978312 NA non-coding downstream 169625 36492051 ~ 36492958 (+)
G1978368 NA non-coding downstream 385073 36707499 ~ 36708827 (+)
G1978398 NA non-coding downstream 417391 36739817 ~ 36741984 (+)
G1978080 NA other upstream 287109 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1583535 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1610952 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1832925 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1833567 34480904 ~ 34481279 (+)
LOC110504241 dnah14 other downstream 895835 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 942354 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1398708 37721134 ~ 37729904 (+)
G1980792 NA other downstream 2206181 38528607 ~ 38529105 (+)

Expression


Co-expression Network