G1978102


Basic Information

Item Value
gene id G1978102
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36016262 ~ 36020287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261245
tttctctccatctttctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctacgtcactccatctctctctccgtcactccgtctctctctccgtcacgccgtctctctctccgtcactctctccgtcactccgtctctctctccgtcactcagtctctctctccgtcactccgtctctctctctgtcactccgtctttctctctccgtcactccgtctttctctctccgtcactccgtctttcACTCAGTCACTCCGTCTTTCACTCAGTCACTCCGTCTTTCACTCAGTCACTCCGTCTTTCACTCagtcactccgtctttctctccgtcactccgtctttctctccgtcactccgtcgttctctccgtcactccgtctttctctctccgtctttctctccgtctttctctctccgtctttctctccgtctttcactccgtcactccgtctttctctccgtcactccgtctttctctcagtcactccgtctttctctccgtcactccgtctttctctccgtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtctttcACTCAGTCACTCCGTCTTTCACTCAGTCACTCCGTCTTTCACTCAGTCACTCCGTCTTTCACTCagtcactccgtctttctctccgtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtct
>TU2261250
ctctctccgtcactccgtctctctctccgtctctccgtctctctctccgtcactctgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtctttcACTCAGTCactccgtcactccgtctttcACTCAGTCACTCCGTCTTTCACTCagtcactccgtcactccgtctttctctccgtcactccgtctttctctcagtcactccgtctttctctcagtcactccgtctttctctcagtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtctttctctctcggtcactccgtctttctcactccgtcactccgtctttctctctccgtctttctctctccgtcacggtgtctttctctctccgtctctctctccgtctttctc
>TU2261251
ccgtcattccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctctctctccgtcactccgtctttctctccgtcactccgtctttctctctccgtcactccgtctttcACTCAGTCactccgtcactccgtctttcACTCAGTCACTCCGTCTTTCACTCagtcactccg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261245 False 787 lncRNA 0.54 2 36016262 36017096
TU2261250 False 511 lncRNA 0.55 4 36017173 36020287
TU2261251 True 201 lncRNA 0.56 2 36018101 36018831

Neighbor

gene id symbol gene type direction distance location
LOC118944336 NA coding upstream 92328 35920875 ~ 35923934 (+)
LOC110505837 LOC106611304 coding upstream 135835 35876443 ~ 35880427 (+)
LOC110504235 LOC106611305 coding upstream 149475 35864570 ~ 35866787 (+)
LOC110504234 LOC106602716 coding upstream 404561 35539797 ~ 35611701 (+)
LOC110505833 LOC106611286 coding upstream 727098 35249319 ~ 35289164 (+)
LOC110504338 LOC106611336 coding downstream 74182 36094469 ~ 36097074 (+)
LOC110505842 LOC106611334 coding downstream 80997 36101284 ~ 36112211 (+)
LOC110505840 LOC106611332 coding downstream 92070 36112357 ~ 36120256 (+)
LOC110505839 LOC106611331 coding downstream 100103 36120390 ~ 36150603 (+)
LOC110505843 LOC106611333 coding downstream 131128 36151415 ~ 36212745 (+)
G1978098 NA non-coding upstream 12856 36003055 ~ 36003406 (+)
G1978097 NA non-coding upstream 14988 36000991 ~ 36001274 (+)
G1978096 NA non-coding upstream 17081 35998888 ~ 35999181 (+)
G1978094 NA non-coding upstream 20466 35993931 ~ 35995796 (+)
G1978085 NA non-coding upstream 36121 35979931 ~ 35980141 (+)
G1978079 NA non-coding downstream 1521 36021808 ~ 36025038 (+)
G1978081 NA non-coding downstream 7826 36028113 ~ 36028642 (+)
G1978181 NA non-coding downstream 200469 36220756 ~ 36221108 (+)
G1978249 NA non-coding downstream 339417 36359704 ~ 36359947 (+)
G1978280 LOC106611324 non-coding downstream 413850 36434137 ~ 36434672 (+)
G1976689 NA other upstream 1284951 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1312368 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1534341 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1534983 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 1535365 34480030 ~ 34480897 (+)
G1978080 NA other downstream 6246 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 368984 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 1197974 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 1244493 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1700847 37721134 ~ 37729904 (+)

Expression


Co-expression Network