LOC110505842 (LOC106611334)


Basic Information

Item Value
gene id LOC110505842
gene name LOC106611334
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36101284 ~ 36112211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585298.2
CACTGCGCCCCCTTATTAGTCAACTAGTGTATCTATAAATCACTGGTTGTCAGCAGTCAGGTTGTTTCGGTGTTCTTGACCTCCTAAAATGGCTGGTGTTCGAGCCCTGGGTGCGCTGTCCAGAATTACAGCAAGGAGATATGTCCTCTCAGgtATCTCATGCCGTACCTTTTCAGTTGCCCTTGCCATGTCAGCCCGAACCCATGTCAACTATGAAGTGAAAGAGGATGTGGCGGTCATTCGGATGAATGACCCAAATTCTAAgGTCAACACTCTGTCGGTCCGGATGCAAAATGAGATGATAGAAGTATTTGATGAGGTCTTGGCCAACGATGCAGTCCAGAGTGCTGTCCTCATCTCTTCCAAGCCTGGCTGCTTCATTGCAGGAGCTGACATCAACATGATCCAGGCCTGTAACACCTCCGAGGAGGTCACAAAGCTATCTCAGGAGGGACAGAAGATGTTTGAGAGGATTGAGAAATCGCCCAAGCCCATTGTTGCGGCCATCAACGGCTCCTGCTTAGGAGGAGGCTTAGAGTTTGCCATCGCCTGCCAGTACAGAGTTGCTACTAAGAGTAAGAAGACCGTGCTGGGAACCCCTGAGGTGATGCTTGGTCTTCTACCTGGAGCTGGAGGAACACAGAGACTCCCTAAGATGGTTGGTATTCCTGGTGCCTTTGACATGATGCTGACAGGAAGAAACATCAAGGCAGACAAAGCCAAGAAGATGGGTCTGGTCCATCAGCTAGTGGACCCACTAGGACCTGGATTGAAGAGTCCAGAGGAGAGGACCATTGAGTACCTGGAGGAGGTTGCCATACAGTGTGCCAGAGGAATTGTCCACAAGAAGATCTCTCTCACCAAGAAGAAAGGCATGATGCAGAAAGTCCAAGACTACGTAATGGGCATTGCGTTTGTGCGGCAACAGATCTACAAAAATGTTAATGGCAAAGTCATGAAGATGAGCAAGGGACTGTATCCTGCCCCCTTGAAAATCATTGAGAGTGTGAAGACTGGCTTGGAACAGGGCCCAGATTCTGGCTATTTGGCAGAAGCACAGAACTTTGGCAAACTGGCAATGACTTCTGAATCACATGCCCTGATTGGACTTTACCATGGCCAAGTGGCATGCAAGAAGAACCGCTTTGGAGTCCCTGAGAGACCGGTCAAGAACCTGGCTATCTTGGGGGCAGGTCTGATGGGTGCAGGCATTGCCCAGGTGACTGTGGACAAGGGCATCCACACTGTCCTGAAGGACACCACCGTGGAAGGGTTGAGCAGGGGTCAGCAGCAGGTCTACAAAGGCCTCAATGACAAAATCAAAAAGAAGGCCATCACGTCATTTGAGAGGGACTCCACACTGTCCAGTTTAACTGGCCAGTTGGACTACAGTGGTTTTGAGAAGGCTGACATGGTCATCGAAGCTGTGTTTGAGGACATCAACATCAAACACAGAGTCATCAAGGAGGTGGAAGCTGTGATTCCACCTCACTGTATATTTGCCACCAACACGTCTGCTCTCCCCATCAAAGATATTGCTGCTGCTAGCATGAGGCCAGAAAAGGTTATTGGTATGCACTACTTCTCTCCAGTGGACAAGATGCAGCTGTTGGAGATCATCACGACCGATAAGACCTCTAAAGACACCACTGCCTCTGCTGTTGCTGTAGGCCTGAAGCAGGGGAAAGTCATCATCGTTGTTGGAGATGGACCTGGGTTCTACACCACCAGGTGTCTGGCTCCTATGTTAGCTGAGGCAGTGCGAGTACTACAGgagGGTGTTAACCCCAAGAAGCTGGATGCCCTGACCACAGGTTTTGGGTTCCCAGTGGGTGCAGCTACACTGGCTGATGAGGTGGGCATTGACGTGGCTGCCCATGTGGCTGAGGACCTCGGCAAAGCATTCGGCTCCAGGTTCGGCGGTGGAAACGTTGACGTGCTgaagaccatggtggagagaggaTTCAAGGGCCGCAAATCAGGAAAGGGCTGCTACGTGTATACGCCAGGACTCAAAAGCAAAGATGTCAACCCCGATATTGACGACCTCCTGGAAAAATTCAAGTTGACACCAAACCCTTCAGTGTCTTCAGACTCTGATGTCCAGTACCGTCTGGTCTCGCGGTTTGTGAACGAGGCAGTGATGTGTCTGCAGGAGGGGATCCTGAACGGCCCTGTAGAGGGAGATATAGGCGCTGTGTTCGGACTGGGATTCCCCCCCTGCCTTGGAGGTCCTTTCCGGTTTGTGGATACCTTCGGTGCCGATAAGCTagtagagaagatgaggaggtatgaggaggtTTATGGCAACCACTTCACCCCCTGTCAGCTACTGCTGGATCACGCCAAGGACTCCAACAAGCGATTCCACAAGTGACTTTCATCATCTACTGATACCATCTAATAGCAGGCTGCCATTAGAATGTGCCTAGGCTGTGTATTTGTCTGTTAACTTAAGCTCAGTGCTTATTTCTTTAAAGTTTGCAGAAGAGAAATCATGAGGGGCCTGTTTTTACAAATCACAAAATGTTTCAAGTTCATAACTAACAGTTCTTTTTTTGAggggtgttttttttatttttatgttttaacATGATTTGAAAGTTCCCTTTTTTTTATAATATTCTGCTGTAATATCCATCTGAGGCAGGTGTAGACCCAACTGGCAATCCTAGTCTTCTCAATGTAAATTTAAATCCATGTCTTCATCTCAAAAGtggactccttttgaccaggatcactacatagggtgccatttcagctTTCATAAGTGACCAGTCTTGGGCTGTTCAGTCATGTTTATTCATCTGAGGTGAatgtttcttttctttttttttttacatttatgatttttttttggtCTTTATGCCATGGTTTGGGTAGTGATGTATGTCATATTTAGAGCCAGTAAATTAATAAATAATGATATTGAAGTACATTCA

Function

NR:

description
trifunctional enzyme subunit alpha, mitochondrial

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585298.2 True 2942 mRNA 0.48 20 36101284 36112211

Neighbor

gene id symbol gene type direction distance location
LOC110504338 LOC106611336 coding upstream 4210 36094469 ~ 36097074 (+)
LOC118944336 NA coding upstream 177350 35920875 ~ 35923934 (+)
LOC110505837 LOC106611304 coding upstream 220857 35876443 ~ 35880427 (+)
LOC110504235 LOC106611305 coding upstream 234497 35864570 ~ 35866787 (+)
LOC110504234 LOC106602716 coding upstream 489583 35539797 ~ 35611701 (+)
LOC110505840 LOC106611332 coding downstream 146 36112357 ~ 36120256 (+)
LOC110505839 LOC106611331 coding downstream 8179 36120390 ~ 36150603 (+)
LOC110505843 LOC106611333 coding downstream 39204 36151415 ~ 36212745 (+)
LOC110505844 LOC106611330 coding downstream 110410 36222621 ~ 36282138 (+)
LOC110505845 dpyl5 coding downstream 181492 36293703 ~ 36314438 (+)
G1978081 NA non-coding upstream 72642 36028113 ~ 36028642 (+)
G1978079 NA non-coding upstream 76246 36021808 ~ 36025038 (+)
G1978102 NA non-coding upstream 80997 36016262 ~ 36020287 (+)
G1978101 NA non-coding upstream 81325 36015942 ~ 36019959 (+)
G1978098 NA non-coding upstream 97878 36003055 ~ 36003406 (+)
G1978181 NA non-coding downstream 108545 36220756 ~ 36221108 (+)
G1978249 NA non-coding downstream 247493 36359704 ~ 36359947 (+)
G1978280 LOC106611324 non-coding downstream 321926 36434137 ~ 36434672 (+)
G1978312 NA non-coding downstream 379840 36492051 ~ 36492958 (+)
G1978368 NA non-coding downstream 595288 36707499 ~ 36708827 (+)
G1978080 NA other upstream 73547 36026533 ~ 36027737 (+)
G1976689 NA other upstream 1369973 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1397390 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1619363 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1620005 34480904 ~ 34481279 (+)
LOC110505847 LOC106611313 other downstream 277060 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 1106050 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 1152569 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1608923 37721134 ~ 37729904 (+)
G1980792 NA other downstream 2416396 38528607 ~ 38529105 (+)

Expression


Co-expression Network