LOC110505837 (LOC106611304)


Basic Information

Item Value
gene id LOC110505837
gene name LOC106611304
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35876443 ~ 35880427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021585292.2
ATGTCGATGAGCCCTAGGCATACGACTCCTTTTTCTGTTTCCGATATCTTGAGTCCTCTTGAGGAGAGCTACAAGAAAGTAAGTATGGAGAATAACAACTTGGGGTCACCTCTCGCGTCGTACCGGCAGCCGCAGGTGTCTCAGGCGATGATGCAGCAGCACCACATGGGCCATAACGGGACGGTGTCCGCGGCATACCATATGACTGCGACGGGGGTGTCCCAGCTGTCACACACCGCAATGGGGGGCTACTGTAACGGCAACCTGGGGAACATGAGCGACCTGACGCCCTACCAGGACGGCATGAGAGGCAGCGCCACGGCTGCTGGCTGGTACGGAGCCAACACAGACCCGCGATTCTCCACGATCTCGCGCTTCATGGGCTCTTCTTCGGGCATGAACATGGGCAGTATGGGCAGCCTTGGCTCGCTAGTAGACGTGGGGAAAGGCATGGGCCCGCTCTCGAGCACCCCGAGAAGGAAGAGGCGCGTGCTATTCTCTCAGGCTCAGGTCTACGAGCTCGAGCGGCGATTCAAACAACAGAAGTACCTATCGGCGCCTGAGAGAGAACACCTGGCGAGCATGATCCACCTCACCCCGACCCAGGTCAAAATCTGGTTTCAGAACCACCGATATAAAATGAAGAGGCAAGCGAAGGACAAAGTGTCGCAGCAGCAGATGCAACAGGACAGTAGTTCCTGTCAGCAGCATTCCCCTCGGCGGGTGGCTGTGCCTGTGTTAGTGAAAGACGGCAAGCCATGCCAAGGCAGTGCCCACACTCCCACCACTACTGTACAGGCCCACCACCAACAAGGTGCCAATGTTATGATCATGTCCAGTAACGGTTCAGGCCTAGGTCAGCACCAGAGCCAACAGGTGGGTAGTGCAGATCACTCTCCAGACCTAGCACAACACTCTGCCAGCCCACCGTCTCTCCAGACCCAGGTAGCCGGCCTCTCTCACCTGAACTCCTCCAGCGCCGAGTACGGGACGGCCCTGCAGTGCTCTGCTCTGTTATATGGCAGGACATGGTGATCTGTTATGCAGCGGGACATGATGATCTGTTTATACGGCAGGACATGGTGATCTGTTATATGGCAGGACATGGTGACAGCCAGACAAACTATgatcacaaacacacatacaacactGCTCTCAAAGCTTTTTCAGCAAAGTCACTCAACAGACacgcaaacaaacaaaccaattgTACTTTGTGTACATTTTGAACAACACCATTTGGTGAATTTTAGTTCATGCTCTTCTAAAATGTAATTGGATATGAGGACAGTAAGTGGAGACGAAAGAAACTCGACAGATGAAGTTATGAGGATATGCGAGTTCAATCTTCGCTTTGAAGGTGGATTTCTTATTTCTGTAAATTATACTGAAGCTATACAGGGCTAGTCCTACATCAAGAGGTCATAGGCCCTACTCCTGTGTGTTGGTCATTGGGCTAAAGATCTCAATAGAAAAACTGTGGGTGCTTTTCAATTTTTTTCACAGAAGGCTCTGGTTTATAATAGAATTTAATGTAAAACGTAGCTTGTATATATTTCTGTAAAAGGTTTGAATTGAATATATAGTTTTTAGCAATCTGTTGTACAAAGTTTTTAGCGCTATTAATGGTTTGTGGTTGGTTCTTTGAGTTCCATCGGTATTTGTACGTTTTATTTACTTGTAACTTATATAGATAGATATTACTTAAATACAGCCAAACAATCCTATTAAtaaattatgataataaaattCATTCAGATCCATTTATTGAAATTGTTTTGTATACTGTTTCAGAGAATACATAGGCCTACGAGAAACCTTGTCAAATTATTTTCAGAAAACGAATAGGAAaattaatactataataataataataataataataataatattattattgtagtagtaataataaagaTGATGATTCTAATTATAATAATGCATGATATTGTCTATAGTCCACTTTAGCTTGTCAATTCAGTAAGTCTCAATTTAGACCGAAATCATTTTTTGCTGTCTTATTTATTATGTTAACTGCACACAATAATGGATTTTAAGCAATGCACGACTAATGAAAACCTCTTTTTGACCAGGTGTGATCGAAATCGTTGTTACTAAGTGTTGCTGTGTAGGTAGGCTAAATTGTTATTAGCCTAATGCTAACTTTTGCCTGAAAGAGCTTAACCCCAATTCCAGGCTATTTGGTCACGTTTATTATAGCTACAATCAACGGTTGTCTGTAGATGTGGTTCGTGGTACTCTGTGGCCGTTCCTACACAACGCGGCGCCTCACAAATCGTGTATTGTGTACACACTATCTCACTTGGATCACGCTGGGTAAACTCAGGCCAGGTCTTTGTGTGCACTCGGCGTCCCTTAGGTTCCTAGCGTTCTTACGTTCTCTGCCTGTTTCTGGTTTGGGTGAGTCATTTAGGTGAGGTCTCGAAGCGTTCTTTTTAACCCTGGAGATCAAACACGCGCTGACTAAAAGAACGTCTTATCGACCAAATCCCTTGCCAAACAACAGTATTCTTCTCAAATAACTTCGCAAGACAAATCGTCGTCTCTTATCAGAGGTAAGCattgtaaggtctgttgtattcggcgcatgtgacaaataacatttgatttgatttaagcaTACGTTTATCAATAATCGATAAATCAACTGGGGTTGAAATGAAAATAGCGTGCAGTCTTTCATTTTAGAAGTTTAATGTAATTTGCTTATACCAAGTGGGATGACACGGCCCTGGCTCGTCAAGTTAGCATTTGCATGCGGTGGAGAAGATATTTTGTGGTTTTTAATTGATTCGAGAATGTTTTAACATATAAATGGTACATTTCAAATGAATTGTGTGGGACGGACCCATAGGTCCATTGTGTGGGACGGACCCATAGGTCCATTGTGTGGGACGGGCCCATAGGCCCATTGTGTGGGACGAACTCTGTGTTCTTGTAATTTAGTTGTAATGTAAAGGACTTGCAACTATTTTGATAGTATGgtattatacactgagtatacaaaacaggtgaaagctatgatcccgtattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggggagacaggttaaagaacgatatttaag

Function

NR:

description
homeobox protein Nkx-2.1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09342 NKX2-1, TITF1; homeobox protein Nkx-2.1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021585292.2 True 3126 mRNA 0.44 2 35876443 35880427

Neighbor

gene id symbol gene type direction distance location
LOC110504235 LOC106611305 coding upstream 9656 35864570 ~ 35866787 (+)
LOC110504234 LOC106602716 coding upstream 264742 35539797 ~ 35611701 (+)
LOC110505833 LOC106611286 coding upstream 587279 35249319 ~ 35289164 (+)
LOC110505832 mta1 coding upstream 636262 35167148 ~ 35240181 (+)
LOC100305155 LOC106611282 coding upstream 775456 35088694 ~ 35100987 (+)
LOC118944336 NA coding downstream 40448 35920875 ~ 35923934 (+)
LOC110504338 LOC106611336 coding downstream 214042 36094469 ~ 36097074 (+)
LOC110505842 LOC106611334 coding downstream 220857 36101284 ~ 36112211 (+)
LOC110505840 LOC106611332 coding downstream 231930 36112357 ~ 36120256 (+)
LOC110505839 LOC106611331 coding downstream 239963 36120390 ~ 36150603 (+)
G1977988 NA non-coding upstream 57509 35818726 ~ 35818934 (+)
G1977986 NA non-coding upstream 60427 35815815 ~ 35816016 (+)
G1977983 NA non-coding upstream 66797 35809418 ~ 35809646 (+)
G1977980 NA non-coding upstream 69484 35806617 ~ 35806959 (+)
G1977953 NA non-coding upstream 129041 35746933 ~ 35747402 (+)
G1978063 NA non-coding downstream 61567 35941994 ~ 35944180 (+)
G1978073 NA non-coding downstream 74753 35955180 ~ 35955379 (+)
G1978074 NA non-coding downstream 75425 35955852 ~ 35956065 (+)
G1978082 NA non-coding downstream 85979 35966406 ~ 35966722 (+)
G1976689 NA other upstream 1145132 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1172549 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1394522 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1395164 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 1395546 34480030 ~ 34480897 (+)
G1978080 NA other downstream 146106 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 508844 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 1337834 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 1384353 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1840707 37721134 ~ 37729904 (+)

Expression


Co-expression Network