LOC100305155 (LOC106611282)


Basic Information

Item Value
gene id LOC100305155
gene name LOC106611282
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35088694 ~ 35100987 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165059.1
ATTTCACAACGAGGCGTGGTTAAGAACGGACAGGTGGGCTGTTGCTGCTGTATAACTGCTGTGAGCATTAATTCAACTAGGATACTTCTTTCTATCCCGGAGACCAACACATCACCATGCCGAAGTGCCCAAAATGCACAAAGGAAGTTTACTTCGCGGAGAGAGTGACATCACTGGGGAAGGACTGGCACAGACCCTGTCTGAAGTGTGAGAAGTGTAACAAGACGCTGTCGGCCGGATCACACGCAGAGcacgaTGGCAAGCCTTACTGTAACAGCCCCTGCTACTCTGCGCTGTTTGGGCCTAAGGATTTGGACGTGGGGGAGCTGAAAGCCACACATTCACTAAGTAGACCAACTCAGGTTCATCCACCACACCAAATGGGTTTCAAGAAGAAGGCAACTCAGCGTTCTATAGCATCCTCCATACTATgctaaacaaaaacaaacaaccaAAACGACTCCTTTTTGGAGCCAGCGTTTTGtgttattttctgtctttgtgttgtCTAGCGGAATCAGTCTTAATACACATTTTAATTGGCTATAGTGAGATGTTTACTATAGTCCTGCTAGTGGATCGGAGGGTTATACAATAACCTCTCTGTTCCTGTACATGTTTTTTAAATTCTAATTAAACAgtctttttcaaaatgtt
>TU2260366
GGCGTGGTTAAGAACGGACAGGTGGGCTGTTGCTGCTGTATAACTGCTGTGAGCATTAATTCAACTAGGATACTTCTTTCTATCCCGGAGACCAACACATCACCATGCCGAAGTGCCCAAAATGCACAAAGGAAGTTTACTTCGCGGAGAGAGTGACATCACTGGGGAAGGACTGGCACAGACCCTGTCTGAAGTGTGAGAAGTGTAACAAGACGCTGTCGGCCGGATCACACGCAGAGcacgaTGGCAAGCCTTACTGTAACAGCCCCTGCTACTCTGCGCTGTTTGGGCCTAAAGGATTTGGACGTGGGGGAGCTGAAAGCCACACATTCACTAAGTAGACCAACTCAGGTTCATCCACCACACCAAATGGGTTTCAAGAAGAAGGCAACTCAGCGTTCTATAGCATCCTCCATACTATgctaaacaaaaacaaacaaccaAAACGACTCCTTTTTGGAGCCAGCGTTTTGtgttattttctgtctttgtgttgtCTAGCGGAATCAGTCTTAATACACATTTTAATTGGCTATAGTGAGATGTTTACTATAGTCCTGCTAGTGGATCGGAGGGTTATACAATAACCTCTCTGTTCCTGTACATGTTTTTTAAATTCTAATTAAACAgtctttttcaaaa

Function

NR:

description
PREDICTED: cysteine-rich protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165059.1 False 657 mRNA 0.45 5 35088694 35100987
TU2260366 True 642 lncRNA 0.45 5 35088706 35100983

Neighbor

gene id symbol gene type direction distance location
LOC110505830 LOC106611281 coding upstream 31750 35012695 ~ 35056944 (+)
LOC110505824 snap23 coding upstream 317674 34750884 ~ 34771020 (+)
tmem121aa LOC106602575 coding upstream 402955 34681732 ~ 34685739 (+)
tedc1 LOC106611146 coding upstream 611547 34457515 ~ 34477147 (+)
dnal1 dnal1 coding upstream 636107 34446701 ~ 34452841 (+)
LOC110505832 mta1 coding downstream 66161 35167148 ~ 35240181 (+)
LOC110505833 LOC106611286 coding downstream 148332 35249319 ~ 35289164 (+)
LOC110504234 LOC106602716 coding downstream 438810 35539797 ~ 35611701 (+)
LOC110504235 LOC106611305 coding downstream 763583 35864570 ~ 35866787 (+)
LOC110505837 LOC106611304 coding downstream 775456 35876443 ~ 35880427 (+)
G1977298 NA non-coding upstream 36898 35047233 ~ 35051796 (+)
G1977284 NA non-coding upstream 50773 35036122 ~ 35037921 (+)
G1977281 NA non-coding upstream 78964 35009509 ~ 35009730 (+)
G1977265 NA non-coding upstream 105129 34983207 ~ 34983565 (+)
G1977258 LOC106611279 non-coding upstream 114313 34973442 ~ 34974381 (+)
G1977321 NA non-coding downstream 7622 35108609 ~ 35108809 (+)
G1977324 NA non-coding downstream 12635 35113622 ~ 35113829 (+)
G1977326 NA non-coding downstream 13338 35114325 ~ 35114678 (+)
G1977329 LOC106611283 non-coding downstream 17414 35118401 ~ 35120119 (+)
G1977328 LOC106611283 non-coding downstream 19885 35120872 ~ 35141658 (+)
G1976689 NA other upstream 357383 34730027 ~ 34731311 (+)
G1976680 NA other upstream 384800 34701980 ~ 34703894 (+)
G1976575 NA other upstream 606773 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 607415 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 607797 34480030 ~ 34480897 (+)
G1978080 NA other downstream 925546 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 1288284 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 2117274 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 2163793 37264780 ~ 37311200 (+)
G1980026 NA other downstream 2620147 37721134 ~ 37729904 (+)

Expression


Co-expression Network