G1977258 (LOC106611279)


Basic Information

Item Value
gene id G1977258
gene name LOC106611279
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34973442 ~ 34974381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2260300
GCtcatcccagatctgttggtgctgtcttgccaaccccAAACATTGGCATGACAATGAACATAGGAGTTGGCAAGGCTGCACAAACAGACTCGGAACCAGGTTACCATGATAAAGGTGAGATAAACCTGTCATTAAAGCTAATCATGAAGAGTCCTATTACCTGCCCTCCGCTGCAAGCCGACTGGGTGGTCTCCCCGGCGGTGGGCGTGGAAGGTACTGTGCAGCACTCTCCGGCTCTGGGGCCGGGTTGGTAGGGTTAAAAGGGCGTGGGATCTTGCTCTTACGGAACAGGGggctggaagaggaggagagggagggggcgtCATTCCCCTGGCAGTCAGAGCCCAGGAACGACTCATCGGCCTTCTCAGAGTGGTCTGAGGCGGAGGACAGCTGGTCCCCGTGGGGGAGCAAGGCCACGACGGGGCCGCGgtgggagatagagggagagggggctgggtggTGGCCTCCTCCCTGGTGGTGGGGGGCTTTCTTCTGGAGCAGCTTCTCCATGGCAGAGCCAGGGGTGGGGAGAAGGTCCAGCAGGACGGGGATACGGCTCAGCTTGCGGGAGGGGTCCTTACGGGGACTGGGTGGCGGAGAGGGGGTGGTCAGAGCTGGGGTTTGGTCAGTGGTCTCCACCCCATCACCCCTGTCAGGCTGGGGTTGGTCACTCTCAGGGTCTTTGAGCTCTGGAAAGGCTCCACAGCCACTGACGTCTCCCTGGCCGttagctgggggagagagatggcCGTTTACTAGGCCGAACAGTGGGCTGTGGGGGGACTTAGGGGAATTAGAACGTGGAGAATGAGAAGAACGGGGGGAGCGAGGAGAACGGGGGGAGCGAGGAGAATGGGGGGAGCGAGGAGAATTAGAACGTGGAGATTGAGGAGAACGGGGGGAGCGAGGAGAACGGGGGGAGCGAGGAGAATGGGG
>TU2260298
GCCCTCCGCTGCAAGCCGACTGGGTGGTCTCCCCGGCGGTGGGCGTGGAAGGTACTGTGCAGCACTCTCCGGCTCTGGGGCCGGGTTGGTAGGGTTAAAAGGGCGTGGGATCTTGCTCTTACGGAACAGGGggctggaagaggaggagagggagggggcgtCATTCCCCTGGCAGTCAGAGCCCAGGAACGACTCATCGGCCTTCTCAGAGTGGTCTGAGGCGGAGGACAGCTGGTCCCCGTGGGGGAGCAAGGCCACGACGGGGCCGCGgtgggagatagagggagagggggctgggtggTGGCCTCCTCCCTGGTGGTGGGGGGCTTTCTTCTGGAGCAGCTTCTCCATGGCAGAGCCAGGGGTGGGGAGAAGGTCCAGCAGGACGGGGATACGGCTCAGCTTGCGGGAGGGGTCCTTACGGGGACTGGGTGGCGGAGAGGGGGTGGTCAGAGCTGGGGTTTGGTCAGTGGTCTCCACCCCATCACCCCTGTCAGGCTGGGGTTGGTCACTCTCAGGGTCTTTGAGCTCTGGAAAGGCTCCACAGCCACTGACGTCTCCCTGGCCGttagctgggggagagagatggcCGTTTACTAGGCCGAACAGTGGGCTGTGGGGGGACTTAGGGGAATTAGAACGTGGAGAATGAGAAGAACGGGGGGAGCGAGGAGAAC
>TU2260299
GCCCTCCGCTGCAAGCCGACTGGGTGGTCTCCCCGGCGGTGGGCGTGGAAGGTACTGTGCAGCACTCTCCGGCTCTGGGGCCGGGTTGGTAGGGTTAAAAGGGCGTGGGATCTTGCTCTTACGGAACAGGGggctggaagaggaggagagggagggggcgtCATTCCCCTGGCAGTCAGAGCCCAGGAACGACTCATCGGCCTTCTCAGAGTGGTCTGAGGCGGAGGACAGCTGGTCCCCGTGGGGGAGCAAGGCCACGACGGGGCCGCGgtgggagatagagggagagggggctgggtggTGGCCTCCTCCCTGGTGGTGGGGGGCTTTCTTCTGGAGCAGCTTCTCCATGGCAGAGCCAGGGGTGGGGAGAAGGTCCAGCAGGACGGGGATACGGCTCAGCTTGCGGGAGGGGTCCTTACGGGGACTGGGTGGCGGAGAGGGGGTGGTCAGAGCTGGGGTTTGGTCAGTGGTCTCCACCCCATCACCCCTGTCAGGCTGGGGTTGGTCACTCTCAGGGTCTTTGAGCTCTGGAAAGGCTCCACAGCCACTGACGTCTCCCTGGCCGttagctgggggagagagatggcCGTTTACTAGGCCGAACAGTGGGCTGTGGGGGGACTTAGGGGAATTAGAACGTGGAGAATGAGAAGAACGGGGGGAGCGAGGAGAACGGGGGGAGCGAGGAGAATGGGGGGAGCGAGGAGAATTAGAACGTGGAGATTGAGGAGAACGGGGGGAGCGAGGAGAACGGGGGGAGCGAGGAGAATGGGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2260300 False 940 lncRNA 0.61 1 34973442 34974381
TU2260298 False 677 lncRNA 0.65 1 34973605 34974281
TU2260299 True 777 lncRNA 0.64 1 34973605 34974381

Neighbor

gene id symbol gene type direction distance location
LOC110505824 snap23 coding upstream 202422 34750884 ~ 34771020 (+)
tmem121aa LOC106602575 coding upstream 287703 34681732 ~ 34685739 (+)
tedc1 LOC106611146 coding upstream 496295 34457515 ~ 34477147 (+)
dnal1 dnal1 coding upstream 520855 34446701 ~ 34452841 (+)
LOC110504337 NA coding upstream 1684834 33282986 ~ 33288608 (+)
LOC110505830 LOC106611281 coding downstream 38314 35012695 ~ 35056944 (+)
LOC100305155 LOC106611282 coding downstream 114313 35088694 ~ 35100987 (+)
LOC110505832 mta1 coding downstream 192767 35167148 ~ 35240181 (+)
LOC110505833 LOC106611286 coding downstream 274938 35249319 ~ 35289164 (+)
LOC110504234 LOC106602716 coding downstream 565416 35539797 ~ 35611701 (+)
G1977257 NA non-coding upstream 782 34972025 ~ 34972660 (+)
G1977256 NA non-coding upstream 5621 34966224 ~ 34967821 (+)
G1976794 NA non-coding upstream 8177 34901798 ~ 34965265 (+)
G1976808 NA non-coding upstream 35162 34937823 ~ 34938280 (+)
G1976793 NA non-coding upstream 73350 34899888 ~ 34900092 (+)
G1977265 NA non-coding downstream 8826 34983207 ~ 34983565 (+)
G1977281 NA non-coding downstream 35128 35009509 ~ 35009730 (+)
G1977284 NA non-coding downstream 61741 35036122 ~ 35037921 (+)
G1977298 NA non-coding downstream 72852 35047233 ~ 35051796 (+)
G1976689 NA other upstream 242131 34730027 ~ 34731311 (+)
G1976680 NA other upstream 269548 34701980 ~ 34703894 (+)
G1976575 NA other upstream 491521 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 492163 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 492545 34480030 ~ 34480897 (+)
G1978080 NA other downstream 1052152 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 1414890 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 2243880 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 2290399 37264780 ~ 37311200 (+)
G1980026 NA other downstream 2746753 37721134 ~ 37729904 (+)

Expression


Co-expression Network