LOC110504235 (LOC106611305)


Basic Information

Item Value
gene id LOC110504235
gene name LOC106611305
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35864570 ~ 35866787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962865.1
TATCTCAGGGACATTATTTACAACATGATTGTTCAAGTCTTTTCAAAATACCTGTAATGACTACGGGCTGCACATCCATAAATAAATTAGTTAAACCAACTCAGGGACATCTCACACTAATTGCTCACTTTGTATGCAAATATTGGACATGTTATTTCGACGGGGGGGAGTGGCGGGGCTGGGCTCTGTTGTCACTTGCCACCCAAGATGTGATTCAGCTGCAACAATCACCATTATCTGGTCACCACTTTTAACGATACGGGACGAATCTGTAATGATGACGAGTGTTTCCTTCCGCCATTGTTGAGGCAATGGTGTTATTCTTCTGTGCGGGTTCACACCTACCATCATTGGATAACGGCACTCGAATCATTCAGGTACTTAGCATCCTGGAGGAGGATATATAAGCGGGCGAAGTACTGTTTATACAAACACTGCACTACCTCGTGTCCACACACAGCCAGGGTATTCTAGGTCGTCTGTGACTCTGACTGCGCACGCTTAGCCATTTTTTGATACGTCGCTTTTGCTCCTATATCAACGGCCTCTCTCCTTTGGATAGTTTTCACGCACAAGGATTCCGTTTTTTCCGGAAGCAATGGCTGGTGCTGCAAAGTTCAGTTTTTCCGTGAGGAGCATCCTGGATTTGCCTGAAAATGACGCAGAGACAGTGCAGCGGGGCTCCCCCGGTAACTCCTGCTCCAGCTCCCCTTACTCCTCCTGGATGGACAGCGACCGGACCCCTTGTCTCTCTTCAGATGAGAGCAGCCTGGAGACTGCCCCAGACTCAACCAAGTCAGATGAGTATTCTCTGGACTCAGGGGCAGAGAAGAAGAAGTGCCGCGTGCTCTTCTCCAAGGCCCAGACATTCGAGCTCGAGAGGCGCTTCTGTCAGCAGCGCTATCTGTCAGCACCAGAGCGCGAGCAGATTGCCCATATTCTCCGCCTGACGCCGACGCAGATTAAGATCTGGTTCCAGAACCACCGGTACAAAATGAAGAGGTCACGAGCGGAGGGAACGTCACAAGACATAAACCAACCGTCTATGTTGCGCAGAGTAGTGGTACCCATCCTAGTTCGGGATGGCAAGCCTTATCAGACCTGTTTCATTGACACGGAGAAAGGAGGCTGTCTTGGGCCGACCACATTCCCGGGTACACCCTTCAGTTTTGGGTACCAGTCTTTCCAGCATCCGTCGCCGTTCGCTCTACCTCAACAATACCAGCACTTTGCCAGCCCGGCAGCATCCAGACACACCTTTGCTTGGAGAGACTTTCTGAACGACTCAGCTCAATTCAGTGCTTTTACGTGACTATAAAATATTAAGTAGAGGAACACTTACAACCACTTTAAATGTTTTCTGAATTATCTTATTTTTCGAGGTACTTAAAAGTGTACTAATAAGTACAGTAATGTTTTTTTATGAGAAGTATTTTGCACATATTttatttttggtattttattaaatGAATTGAATGATATTCTCGAAAGATTGGAATCGTTATTAGTTTATTGTAATCTGATGGTAGGCCTATGGACATTCTACTCCTAGATTCAACCCCCCAATTCGATAATGTGGTGTATGCAAGCCTGATTTGTGTGTAGCCTATATTTTATCAGTATTTTCAATGTTCAGTTATTTGTATGAATTTCAAATCTACACAATGATATTTATCAAATGTACTAGGAAAGTAAAGGATTTCATTGATTTAAATATTCCGTTTTTCA

Function

NR:

description
homeobox protein Nkx-2.8-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09347 NKX2-8; homeobox protein Nkx-2.8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962865.1 True 1728 mRNA 0.45 2 35864570 35866787

Neighbor

gene id symbol gene type direction distance location
LOC110504234 LOC106602716 coding upstream 252869 35539797 ~ 35611701 (+)
LOC110505833 LOC106611286 coding upstream 575406 35249319 ~ 35289164 (+)
LOC110505832 mta1 coding upstream 624389 35167148 ~ 35240181 (+)
LOC100305155 LOC106611282 coding upstream 763583 35088694 ~ 35100987 (+)
LOC110505830 LOC106611281 coding upstream 807626 35012695 ~ 35056944 (+)
LOC110505837 LOC106611304 coding downstream 9656 35876443 ~ 35880427 (+)
LOC118944336 NA coding downstream 54088 35920875 ~ 35923934 (+)
LOC110504338 LOC106611336 coding downstream 227682 36094469 ~ 36097074 (+)
LOC110505842 LOC106611334 coding downstream 234497 36101284 ~ 36112211 (+)
LOC110505840 LOC106611332 coding downstream 245570 36112357 ~ 36120256 (+)
G1977988 NA non-coding upstream 45636 35818726 ~ 35818934 (+)
G1977986 NA non-coding upstream 48554 35815815 ~ 35816016 (+)
G1977983 NA non-coding upstream 54924 35809418 ~ 35809646 (+)
G1977980 NA non-coding upstream 57611 35806617 ~ 35806959 (+)
G1977953 NA non-coding upstream 117168 35746933 ~ 35747402 (+)
G1978063 NA non-coding downstream 75207 35941994 ~ 35944180 (+)
G1978073 NA non-coding downstream 88393 35955180 ~ 35955379 (+)
G1978074 NA non-coding downstream 89065 35955852 ~ 35956065 (+)
G1978082 NA non-coding downstream 99619 35966406 ~ 35966722 (+)
G1976689 NA other upstream 1133259 34730027 ~ 34731311 (+)
G1976680 NA other upstream 1160676 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1382649 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1383291 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 1383673 34480030 ~ 34480897 (+)
G1978080 NA other downstream 159746 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 522484 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 1351474 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 1397993 37264780 ~ 37311200 (+)
G1980026 NA other downstream 1854347 37721134 ~ 37729904 (+)

Expression


Co-expression Network