Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118944336 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 35920875 ~ 35923934 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005039580.1 | False | 456 | mRNA | 0.38 | 3 | 35920875 | 35923934 |
| TU2261178 | True | 166 | lncRNA | 0.43 | 2 | 35923451 | 35923730 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110505837 | LOC106611304 | coding | upstream | 40448 | 35876443 ~ 35880427 (+) |
| LOC110504235 | LOC106611305 | coding | upstream | 54088 | 35864570 ~ 35866787 (+) |
| LOC110504234 | LOC106602716 | coding | upstream | 309174 | 35539797 ~ 35611701 (+) |
| LOC110505833 | LOC106611286 | coding | upstream | 631711 | 35249319 ~ 35289164 (+) |
| LOC110505832 | mta1 | coding | upstream | 680694 | 35167148 ~ 35240181 (+) |
| LOC110504338 | LOC106611336 | coding | downstream | 170535 | 36094469 ~ 36097074 (+) |
| LOC110505842 | LOC106611334 | coding | downstream | 177350 | 36101284 ~ 36112211 (+) |
| LOC110505840 | LOC106611332 | coding | downstream | 188423 | 36112357 ~ 36120256 (+) |
| LOC110505839 | LOC106611331 | coding | downstream | 196456 | 36120390 ~ 36150603 (+) |
| LOC110505843 | LOC106611333 | coding | downstream | 227481 | 36151415 ~ 36212745 (+) |
| G1977988 | NA | non-coding | upstream | 101941 | 35818726 ~ 35818934 (+) |
| G1977986 | NA | non-coding | upstream | 104859 | 35815815 ~ 35816016 (+) |
| G1977983 | NA | non-coding | upstream | 111229 | 35809418 ~ 35809646 (+) |
| G1977980 | NA | non-coding | upstream | 113916 | 35806617 ~ 35806959 (+) |
| G1977953 | NA | non-coding | upstream | 173473 | 35746933 ~ 35747402 (+) |
| G1978063 | NA | non-coding | downstream | 18060 | 35941994 ~ 35944180 (+) |
| G1978073 | NA | non-coding | downstream | 31246 | 35955180 ~ 35955379 (+) |
| G1978074 | NA | non-coding | downstream | 31918 | 35955852 ~ 35956065 (+) |
| G1978082 | NA | non-coding | downstream | 42472 | 35966406 ~ 35966722 (+) |
| G1978085 | NA | non-coding | downstream | 55997 | 35979931 ~ 35980141 (+) |
| G1976689 | NA | other | upstream | 1189564 | 34730027 ~ 34731311 (+) |
| G1976680 | NA | other | upstream | 1216981 | 34701980 ~ 34703894 (+) |
| G1976575 | NA | other | upstream | 1438954 | 34481519 ~ 34481921 (+) |
| G1976574 | LOC100194703 | other | upstream | 1439596 | 34480904 ~ 34481279 (+) |
| G1976573 | LOC100194703 | other | upstream | 1439978 | 34480030 ~ 34480897 (+) |
| G1978080 | NA | other | downstream | 102599 | 36026533 ~ 36027737 (+) |
| LOC110505847 | LOC106611313 | other | downstream | 465337 | 36376220 ~ 36824709 (+) |
| LOC110504241 | dnah14 | other | downstream | 1294327 | 37161387 ~ 37222396 (+) |
| hivep2b | LOC106611354 | other | downstream | 1340846 | 37264780 ~ 37311200 (+) |
| G1980026 | NA | other | downstream | 1797200 | 37721134 ~ 37729904 (+) |
