RNA id: TU2261178


Basic Information

Item Value
RNA id TU2261178
length 166
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC118944336
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35920875 ~ 35923934 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGGATCTTGTACCTGCATTCATCTGAACTGCATATTGTCAACCGGAAACCCTGAAATGATCAAGccggtgtctattccacaaggtaccaccagctaaatctatgatgttaaaatgcctatttactctacAATCTGACTGTGGAATCCACCGTCTCATCAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261102 lncRNA upstream 104517 35818726 ~ 35818934 (+) True G1977988
TU2261100 lncRNA upstream 107435 35815815 ~ 35816016 (+) True G1977986
TU2261097 lncRNA upstream 113805 35809418 ~ 35809646 (+) True G1977983
TU2261094 lncRNA upstream 116492 35806617 ~ 35806959 (+) True G1977980
TU2261066 lncRNA upstream 176049 35746933 ~ 35747402 (+) True G1977953
TU2261201 lncRNA downstream 18264 35941994 ~ 35944180 (+) True G1978063
TU2261211 lncRNA downstream 31450 35955180 ~ 35955379 (+) True G1978073
TU2261212 lncRNA downstream 32122 35955852 ~ 35956065 (+) True G1978074
TU2261220 lncRNA downstream 42676 35966406 ~ 35966722 (+) True G1978082
TU2261224 lncRNA downstream 56201 35979931 ~ 35980141 (+) True G1978085
XM_021585292.2 mRNA upstream 43024 35876443 ~ 35880427 (+) True LOC110505837
XM_036962865.1 mRNA upstream 56664 35864570 ~ 35866787 (+) True LOC110504235
XM_036962700.1 mRNA upstream 311750 35539797 ~ 35611701 (+) False LOC110504234
XM_036962702.1 mRNA upstream 311750 35539797 ~ 35611701 (+) False LOC110504234
XM_036962703.1 mRNA upstream 311750 35539797 ~ 35611701 (+) False LOC110504234
LOC110504338 mRNA downstream 170739 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 177554 36101284 ~ 36112211 (+) True LOC110505842
XM_021585297.2 mRNA downstream 188627 36112357 ~ 36120256 (+) True LOC110505840
XR_005039523.1 mRNA downstream 196660 36120390 ~ 36142702 (+) False LOC110505839
XM_021585293.2 mRNA downstream 196660 36120390 ~ 36150603 (+) False LOC110505839
TU2259645 other upstream 1192140 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1219557 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1441530 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1442172 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1442554 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 102803 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 465541 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1294531 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1341050 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1797404 37721134 ~ 37729904 (+) False G1980026

Expression Profile