RNA id: XM_036962702.1


Basic Information

Item Value
RNA id XM_036962702.1
length 8708
RNA type mRNA
GC content 0.49
exon number 32
gene id LOC110504234
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35539797 ~ 35611701 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGACACAAGCGGGTTTGAATCCCGGCGAAATGTGATCCTGCATTTGGCCCTTTAATAGGAATTAGGGATAAACCTAGGGAATGGGGATCCACGTCAAGGAGGCACtgtctcctgacctctctctaCGAGCACGAGAGACACGGGGAACCTGAGTTATACAGGACGATACTACAGCATGAAACGTTGACAGAAGAGGAATAGTAGGAACAGGCTACAGTCAGAAAGTTAATGAGAATAGCAGCCGAGAGCCGTGATGTGATTTACCGGGCCACTTTACTACGcgaggaaagagcgagagagagagactacaaaATCACAAGGTCCGGGTCAGTCGGTTACCAGGCGACAGGGTCCATCTGTCGGGCAGCGGTGCGGTCAACATGGCAGACGTCTTGGAGAGTGGCAGGGCGGGTGCAGGCTCCGTAGTAGGAGCGGGTAGCGTGGATTGGCAGAAGCGTTGTGTTGCCCTGGAGATGCAGCTGCTCAGGTTTCGTCTGCAGGCGGGGAAGATCCGAGAGCTGCTGGCCgagaagATGCAGGAGTTGGAGCTGAGGGTGACAGAGTCTGACCAACGGGCTGAGAGGGCTAAGaaacagATCCATGTCATGGAAGAGAAGCTGAAATATGCAAACGTACAACCCAGTGAATCAGAGAACTCAGTGTTCAGAAGGTACCAGGACCTGACCAATCAGGTGCAGGAGAAAGATGCAGTGATAAAGAGATTAGAGGTGCAGCTGGAAAAACAGATCTTAGTCAGAGCCCAGGAGGCTAAGATCATTGAGGAGAAGGCTGCTAAAATCAAAGACTGGGTTACGTTTAAGCTACGAGAGATGGAGATTGAGAACCAGCAGCTGAAAATGTCCAACCTGAAGCAGGCCGAACAGATTATGATGCTGGAGGACAAACTGCAAGCTCTCATGGAGAAGCCTtcatctcccctcccccccacctctccttccacAGACACCCACCAGGTACCCTCCAGCCCTCTGTACCCCTCATGCTGTCCTGGGACCCCAACTGTCCAGGAGGAGACAGGctgggggagacagacaggtctaggggacagagcagagcagcccTGTAAAcccagaggagacagaggagacacaaCAAGCCACGGCACTGTGACAGTAACCCTGCCAGACACTCCCTCTCTAGGCAGCAAGGGCAGGGaggctggagctggagctggagctggacCTGGTAGTCCTGTTCTAACCACTGGAGGCCAGGACCAACCACTAGGTAGCGCTACTCCCAGAGATCACTCCTCGGACGAGCTCAACAGCAGGTTCCGCTCCCAACGtctccactcttcctcctcttcctcttcctcctcctcatcttcctctgcCTGTGAAACAACACACGGGGGTCCCAGGACCCCTGATATCCCTACGTCCACCTCCACCCCCAAAAACCCTCTCCTCTGCCGCTCTCCATCTAACTCCCACCCCTTCCAGACCCACACCCAGCCCCTGGCACTACCCTCCCATACTGGGACCAGCATGACCCTACCCAAGGTGCGGACCCCTCTGACCCCACGTGACAGCATCCAGCTGCTGAAGAAACACTACAGTCAGCCCCAGCCTGGAGGTGTGGACCGGCTGCACCACCTCAACGTCCCCAGTCAGCCCCAGCCTGGAGGTGTGGACCGGCTGCACCACCTCAACGTCCCCAGTCAGCCCCAGCCTGGAGGTGTGGACCGGCTGCACCACCTCAACGTCCCCAGTCAGCCCCAGCCTGGAGGTGTGGACCGGCTACACCACCTCAACGTCCCCAGTCAGCCCCAGCCTGGAGGTGTGGACCGGCTGCACCACCTCAACGTCCCCATAGACATGACTGCTTCCAGCACCCAGAGCCTTACGTCTCACTCCACCTGCAGTCACTTCCTGGTGGAGACAGATATAGATGACGGGCTGCCTGACAGTATGGAGGGAGTGGTAGAGGTGGCAGAGGGTCCTCCCCAGGAAGGAGTGTCGTTTGTTGGGTTGGCTGAGGGTCTGGAACTGCTGGATCCGGAGGTTCTGAAACCCCCCACCCCGCCTCTGCACCGCTTCCCCTCCtggGAGAGCCGTATCTATGCTGTGGCCAAGTCAGGGATGACAGTATCGGAGATGACCACAGGAGCCAGAAGTCCTGGTCCAGGAAGACCACAGTACCCTGCCGCAGGACCATTCACTCACCTGATTTACAAGAACATCACTGTACCCGTGTATACCACACTGAAAGGGaaAGCCACTCAGATCAGCAGTGTGCCCCTGCATGATGATGACTCTGGTTCGGAGGATGACAGTGGCTCTCTGGCCAGCCTCAGGACCTCCACCCTGGGCCCAGAAAGGAAGGGCAGCACCCCCGGGAGCCCCCGTGCCGTCAAGAGGGGTGTGTCCATGTCATCCATTAGCTCTGAAAGTGACTACGCCATTCCTCCTGACGCCTACTCCCTGGAATCTGACTACTCTGAGCCAGAACACAAAGTCCAGAGAACATCTTCATACTCCTGCGAGAGCCTGCGAGAGCCTGAGATGCTGGAGAAGTCAGGCTACCTGCTGAAGATGGGCAGTCAGGTTAAAGCCTGGAAGAGACGCTGGTTCATCCTGAGGAATGGAGAGATCTTCTACTACAAGTCTCCGAGCGATGTGATACGGAAGCCTCAGGGTCAGATGGAGCTGAACTCTTCCTGTCGTATCGCCCGTGGAGAAGGAGCACAGACCTTCCAGTTGATAACAGAGAAGAAGACATTCTTCCTGACGGCTGACTCTCCCAACATCTTGGAGGAGTGGATCAGAGTTCTACAGAACATCTTCAAAGTCCAAGCCAGCAGCCCCATCGCCATGGAGACCACCACCGCCAAACCTACCGTGAGGGGCTGGCTCACTAAGgtgaAGCATGGCCACTCTAAGCTGGTATGGTGCTCTCTGGTCAGCAAGGTCTTCTATTATTACAGGAACCAGGATGACAAGCTCCCCCTAGGCCAGCTGCGGATGCGTGAggcggtggtggaggaggtggacagGTCATGTGACTCTGACGAGGACTACGAGGCCGGTGGGCGTGGCTTCTTGTCATCTCACTGTACCCTAGTGGTCCACCCCAGAGAGCAAAGCCCCACCTATCTGCTCATAGGGACCAAGCAAGAGAAGGACACCTGGTTGTACCACCTGACAGTCGCGGCAGGCAGCAGTGCCAGCTTCAAGGTGGGCACAGAGTACGAGCAGCTGGTCGGGAACCTCTTAGACGTAGAGGGAGATCCAGACTCTGCGTTGTGGAGGAGTGAGTCTCTTTGTTTCTGTAAAGATGGCCTGCGCTCCCCTCTCACCACTCTACCCTCTGAAGCTCTGCAGACTGAAGCCCTCAAACTCTTCAAGTCCTGTCAGCTGTTCATCAACGTACTGGTGGAGTCTCCCTCCATTGACTACCACATGTCCCTGGCCCAGAATGCATTGCAGGTGTGTCTGACGCACCCAGAGCTCCAGAACGAGATGTACTGTCAGctgattaaacagaccaaccgcCGCACACCACACAACTCCTCCCTCACTCAGtGCTGGCAGctgttggctgtgtgtgtggctctCTTTCTGCCTCAGCAACACTTCCTGTGGTACCTCAGACAGTATCTGCAGCGTCATGCAgaccccagGAGTGAGGTGGGGAAGTATGCTGTGTACTGTCAGAGGTCTGTAGAGCGTACCctgcagaatggagagagagaggcaaaaccATCACGTATGGAGGTCCTGTCTATCCTGCTGAGGAACCCTTACCACCACTCACTACCCTTCAGCATCCCTGTCCACTTTATGAACATCACCTACCAGGTGGTAGGCTTCGATGGCTCCACCACAGTAGACGAGTTCCTGAGCACCCTGACCCAGAGGGTGGGCATGAGGAAACCACACCTGTCAGGCTTCGCTCTCTTCACTGACGACCCCTCAGCGAGAGACCTGGAGCACTGCCTGCAGCCCAGCGTCAAAatctgtgatgtcatctccaaGTGGGAACAGGCCCTGAAAGAACTGCATCCTGGGAAATACGAGGGCACACGCATCGTCCGTCTGATGTACAAGAGCAGGTTGTGTTTCCGGGCCCAGGCTAAAGGAGAGACAGAGCGTGAGCGCCTCCTGCTGACCTACCAGGTGAATGACGAGGTCCACCAGGGACACTTCCCTGTCAACAAGGAGCTGGCTCTGGAGGTGGCTGCTCTCATGGCACAGGTGGAGTATGGGGATCTGGACCGTCCAGCCCCCTCCTGTGCTAGCTGCAGCTCTCCTCAGCCCAAAACACAACAAATCCTCCTACAGGCCCTGGGACGCTTCTACCCCAAGCACTACAAACAAGACTGCAGCATGGACCAGCTCAGACATCTATCGGAGCGTCTGGCCACTAAGTGGTCAGTCCTTCGCGGCTGCAGTGCCTCAGAGTGTGTCAGAATCTACCTGACCGTTGCTAGGAAGTGGCCGTTGTTCGGTGCCAAGCTCTTCCATGCTAAGcCTTTACCCCTGTCGTCTGTAGAACAGTCCCAGGTCTGGCTAGCTGTCAATGAGGATGGACTGTGTGTTCTTGACTATACCATGCACCTTCTGGTCACCTACTCCTACCAATCAGTGATCACCTTTGGCGGTTGCCGTGACGACCTGATGGTGGTAGTGAGCCAGACCAAAGAACAGGGTGGAGGGAAGAAGAGTGTGGAAAAACTGGTCTTCGCATTGCCCAAACCCAAGaTCTTGGAGTTGACTCTGTTGATGGCCAGCTACATTAACTACTGGACGCCCAGCCTCCCTGGCCCCCCTATAGCCCAGCACAAGTCCCCAGGACCCGTCTCCCCTCTGGGGCCCCGCGGGACCGGGACAGGGGCTGCAAAGATGTGGAACTTAGACAGCAGACACTTCCCCTCCATGACTTACACCACCAAGGGTCCCACTCTACTGTGAATAtgtcaaacaacaacaacagcagcaacaatCAACACCCTTGCTCCAGTTTATCTTCGGGACAAGACGGTTGTGTCCAGTAGGGTCCTTAAAGAAGAAAACAGACTAAAACATGGAGActctatacctggacctggtcaaataataaatgtttgttttccatttcaaaacatttttgcaacGGTGTTCCCTACTGGACATGACCCAGGACTGAGAAACTACTACAGGCTGTTGTGGTAAAGAGGACATTGCTCCACATATGTTACGTCTCTGACATTGGCTGTGGTTCTTCTATGTTATCCTCATCCCCTCTAGCCTGAAGTGGATTCTGTTCCATATACACAGGACGTTTCATTtctgaaagaaaaaaaacatttaccgTGAAGAAATGGGAGATGCAAGATATAATCATTTGTGGTTCACTTTATATGAAGATGCCGCTCTTCAAATGTTTGAGTTTTAGTCCGTGCTTAATTTAGGAAAAATATGCTATTTGAAGGACTATTTGAAAAACAATTGAGCCTTGAAATAGGACCAATACACACCCTACTTCTTGACCTTGGCTGTCTGGCCGTTATCCACACAGCCTCAACTCTTCCCTGCCACTCGTCTCTTCCAGAtaccctgcatcccaaatggttcccttttccctatatagtgcactacttttgactagggcccatgaagaatagggtgccatttcacaTACCCTCTGTCTTTTTTTAAAGGGAAAAAAGCTGTTAATCAAGGAAAGACTGAATTTATTCTGGCTCTTTGGTACCTAATATGGAGCTAGGAAGAATTACCTATTCCTTAAACGATGGAGGCTTGAAGTGGCGTTAACCGGTTTCTGAGGGAATCTATTCAACTACAGAGCACTAGTTGTTGCTCACTACCTTCTCCTGACTGGCTTCTGGAGACGCCGTCGCTTTAGAATGGCGCTATCTGACGGAAGACACTGCATTAGTACAAACTAGTACAAAATACTTCGACTTATACTTAAATTGTACTTGATTTTTTCATCAAGAAATTGCACAAAATGTCTGACTTATAGATCACAGCAGGCCAGGGCCTGAGGAGGAACAGCCCACTGGGtaaacactggttgaatcaatgtttccACTGCATTTTAACCCCCAGAAAtctatgtgatgacattgaattgCCATGGGAAACTAATTGGATTTGGAAAAAGTCACCAACTTTTAAACTAAATCGAATGACATGGTTGAATGTTTTTGTCAATATCACGTTGAATTCACggtagttgacaactcaaccaaatgtcaatcaaaactagacgttgaactgatgtctgtgccccgTGGGAGGCAAGGCGCTACGACTTATGGTACTTATGGTACTGATGATGGTAACATTCTGACCAAGCAATGTTTTATAACAATTTTGACCACATACTTTTATTGTGAAGTACAGCGTAACAATATTTTTTCAAGCTGATAGAGAAGAATAGAGATGGAATACAATGTGTCTGTCCGCTGTATGAGGCTTAGTCTGAGATGTATCAACTCATTTGGTGGCATGTTCCTACTCCTCCACTTACTACCTGCCTTGAcaaccagggttgggatcaattccatttcaattcagttacACTGAAATTCCCATGTTAATTCCAAAGCCAGTTTTCCACATTGCCTTTCAATTAGAGAATTTGAAAtgggaatttcagtttacttctagaattgactgaattgaaatggaattgacctccAGCCTTTTTGACAACACAGTGGAAGGTACTGTTAATTCAGCCAGGTAGGACTGATCTAAATGGACAGGTCCAGCCACATAAGAGTGGACTGGTATGATTAGAGCTATTCAAATGTTATTAGTGACTTGAATTGTTTTGGATGAAACCACTGTCTTGGTCATTTAagtgttatttatttaatttcctgATATTTTGTTGCTTTTTTGTATGCTGAAAATTGTTTGGCAGAACTGTTAAATGTTGAACTGAAACGTTCAAAATGGCCTTGACTTTGTTTGTCTCAAGTAGCTGAATAATTTAACTTGACAGTTTTACGCTGTATGGATGCTGTATGAAAGCTGTAAGAATGCTGTATGGATGCtgtatgaatgctgtatgaatgctgtatgaaagCTGTATGAAAGCtgtatgaatgctgtatgaatgctgtatgaaagCTGTATGAATTGTGAAATAGGGATGTTAACTCAATGAAACAGATTAGAGACAATGTGCTTAGCTGTTATGAAGTGTTGTgtttaaaatgaaataaaaaaaagtgcATTATATACAGAAGAGTATTTGGCATGGCTTTCACCTATAAACATTTACGCTCAACATTCTGGTGAATACTAAAGCTCTTACAAAATGCCTGTTCCTTTCTCTCGTTATATTTTTACACACAAACTATCCCCAGACTTTGGCAAATGTACCAGTGTGATGTTGCTTCATCCAAACAGATCAAAGTGGTAATGATATTTTCCTGCCAACAGTTTTGCTATAAATATTTCCTTTTTTTAATGATTACTCAACAACTGTTGTTGTAGTTACTCTATTATGACCAAAAATACTCATTATTGGAAACTCTGCTAACTTGTTGTGCATCATAGCCCCTAGGGCAGGGCAGACGCTGGTCAGTCCCTTGTCCATGTCTTTCCTAATATCACACcactacacagacacagtctctTCTCTGAGCCTGGTTACACTACCTCAGGGTGAGACGATCCTATTCCTGGAGTGCCACAGGTcctgcaggattttgttccaactaggcaccacacctgaccaaccgagctaattgatcagttcagtgattgcctaaattcaacacacctggtcttccaggtcagTTAAACCAAAAACATGACCAGGGTTGCCGACCCCTGCCCTAGGCCCCACAGTGGCTCGTCAGGAAAAATGTTGAAGAGAGGGGTAGCTTGGCTTGTTTTACGTTCCATTCCTTAACATTGCTTATGTTTATCTCTATTTTAGCCTTCTGAGATGTTAAATAACAGCTTTAGCTTGATGTGAATTCAAATTAAGTTTTTGAAGCTCTCCAACTCGCAAATTACAGCACAACATAAATTCACCAAGGGGCATCACTTATTTATCTGTTTAACAGCATGCCTATTTAAAAAAGCAGGAAATAGGTGAGCTGGTGATTTTTGGAAAACTCAGTAGGTCAACAAGTGTAAGCCTACTTGGGAGCAGAAAGTTGGTAAGAGGTTGAGTGAGAGCACTAGAACAAAAACACAGTAGCCTGGGGCCATAATATAGTCTGTGACTATGAGCCCTGTGAAGGTAGCCCGCCGTTTCCATGGAAACTCTAACGTTGCCAAAGACAGACATTCTCTTTTAAAATGTGGACTTCAAGTCCCACACTGGTGTTTTAAAAGTATGTTGCATTGTTTGTTAACCTCtaaagcagggatgggcaacgtTGATGGGGGTGGGCTCACTGGCTTGCGGGTCtgtgtacccacatccatacccacacatgcagtcagagccctAGCCTTTTGGTAGTATGATATCTGAGAGAAAgcaactaacaaaatcaatgggggccctgGTCAGTTATATGACAATGATTAGGCTACTACAAGTTTAGAAAGCTTGCTatactaatttaccaatctaaaaatgtttagctgacatgggctaaatGAGTGAGTGTCAGTCACCCATATAACAAcagaaaactgctgatgcacaaccaaatttcgaaattgcatcTTGTGTATGTATTCTATTCTAAATCTCAACAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2260927 lncRNA upstream 15666 35523919 ~ 35524131 (+) True G1977825
TU2260749 lncRNA upstream 64665 35397495 ~ 35475132 (+) False G1977654
TU2260750 lncRNA upstream 137404 35382316 ~ 35402393 (+) False G1977654
TU2261020 lncRNA downstream 57310 35669011 ~ 35669299 (+) True G1977911
TU2261025 lncRNA downstream 69575 35681276 ~ 35681779 (+) True G1977916
TU2261028 lncRNA downstream 73856 35685557 ~ 35685788 (+) True G1977919
TU2261033 lncRNA downstream 81715 35693416 ~ 35693648 (+) True G1977924
TU2261034 lncRNA downstream 83223 35694924 ~ 35695232 (+) True G1977925
XM_036962929.1 mRNA upstream 250633 35249319 ~ 35289164 (+) False LOC110505833
XM_036962930.1 mRNA upstream 250634 35249319 ~ 35289163 (+) False LOC110505833
XM_036962418.1 mRNA upstream 299616 35167148 ~ 35240181 (+) True LOC110505832
NM_001165059.1 mRNA upstream 438810 35088694 ~ 35100987 (+) False LOC100305155
XM_036963042.1 mRNA upstream 482853 35014734 ~ 35056944 (+) True LOC110505830
XM_036962865.1 mRNA downstream 252869 35864570 ~ 35866787 (+) True LOC110504235
XM_021585292.2 mRNA downstream 264742 35876443 ~ 35880427 (+) True LOC110505837
XR_005039580.1 mRNA downstream 309174 35920875 ~ 35923934 (+) False LOC118944336
LOC110504338 mRNA downstream 482768 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 489583 36101284 ~ 36112211 (+) True LOC110505842
TU2259645 other upstream 808486 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 835903 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1057876 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1058518 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1058900 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 414832 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 777570 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1606560 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1653079 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 2109433 37721134 ~ 37729904 (+) False G1980026

Expression Profile