RNA id: XM_036963042.1


Basic Information

Item Value
RNA id XM_036963042.1
length 8357
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110505830
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35012695 ~ 35056944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTTCGGTATTTCACCGCATGGATCTGAGAGGTACTTTGGACGCGTAAATTACATCGCCCCTCATGCAAGAGGAAAACCATATATGGTCGTGGAAGTAGGTGTGGCGAGCAGACTGGAGAGGATCACAAGGATGAGCCGAAAGAATGTGTTGTTCGATTGAGAGCGTTCTACAGCGGGAGAAACAAGGCCACATAGGACAGCGGATGTGTTGTGTACATGTAGGCTATTTGTGCAATAGTAACGCAATAATGTGCAACACTTATTGTGCGACATTTGTCCATATTCCTGCAGATCGTTGCTCCATTTTGGACTGGATAGCACGTTTGTTTTAATGACATCGATCTACCTCATTCTTTGATTTGAAAAATAATAGTGAGGTCAGCATAGAATGACTCAACGCTAGAGATGCATGCAGTCATATCTCCGTTCGATTGCACACTGTGGGGCGCGTGGACCCGGGGACAGTTGCTGCACTGGTGGTCACCGCAGAAACATGGCAAGCACAGGTGTCTCCCATGAATGAACGAGGCCAGTGGACATCCAGACATCTCTATCAGCACCGGCAACCTCTCAGTACAGCAGGAAGAGGAGTtcaaggggagaaggagaagattGGGTTTTGTCTACGTCCAATCCAACTCCTTGGTTTTTGGTTGCATATGTGGTTTGGTGATTTTCGTTAAAATATGCAACCCCCTCTCCTAGGGTGTGTGCTGTGAACTTTCTATTCCCTTTATCTTCAGATAAGGCCAGTGGAAGAGGGCCACTTTGGGACATACGTTGATTGGTGGTCTGTGTGGTTGGGGGACTGTTATGCACCTAGTACCCCATAGTCCCCCTACCTCGCCCCGTTATTCATGCCAGCCATGAGTTTACCCAACAGTAAGAGAACAGGCAAGCGCATCTCTTTTTTTAACGACCAAGGAGTGGCGATGAAGGAGACGTCTTCTCAACAGAATCCAGAAGGTTCTTGCTACGGCCTTGGTGCCCCAGCCTCAGATCCTGGTCCTGGCCAGAGTAAGGCTGCAGGCACCGTCACCTCCACAACCTCCAACCCAGAGGCTCCACATACTGGTATGTACCTCAACTCAGTGATCTTCAGTCCAGAGAAAGGAGACCAGAGTCGGGGACATTACCAACAGACTGTACCCATGAAGTGGGCACACCAGGACCCAGCAGCTCAACCACAGCCTCAACAGAGAACTGGGACTGAGACTGGGAACTGGACACAGGGTGTCACTATGGCTAACTGGGGTCAGAACTTTGCTCCGTACCTAGGGGGCGTCAACGTCAGTGACTCACGGTCCCAGACCCAGACTGCCTTTTCCAAGCAGCAGATCTGTGAGGGGCCTCCACCCCTGCAGCCACAGCAGCCACAGTCTCCTAGTAGGGCTGCAGAGAAGCAGCCTCCCCAGCCGCAGCAGGTGGTTAACCCCCTGCCTGCTGTAGGAGAGGCCTACAGAGACGTTAGAGACGTGGCCAAGCCTCCCAGCCTAGAGTGGGAGCAGCAGCATCAGGCTTCCCAACAGCAACAGCAGTCACAGACTCAGTCATTCCCACAGACCCTTAAGCCTGGGGCTCTAAATGCCCAGCAGCACAGCACATCCAACCCTGGGAGCAGCTCCGTGCTTCAGCCCTTCCAGCTAGCCTTCGGCCAGCCTAAGCAACACCTAACGGCTGGCTACTACCAGGTGTTTCAGGGGGGCAATAGGACTTTACCTAATCTGAACTACAATTCCCAACAGCCCAAACCCCAACCACATCCACAGACCCAACAGCATCCACAGCTCCAGCAGAAGCTGCAACAGACCCAACAGCATCCACAGCTCCAGCAGAAGCTGCAACAGACCCAACAGCATCCACAGCTCCAGCAGCAGCTGCAACAGACCCAACAGCATCCACAGCTCCAGCAGCAGCTGCAACAGACCCAACAGCATTCACAGCTCCAGCAGCAGCTGCAACAGACCCAACAGCATCCACAGCTCCAGCAGCAGCTGCAACAGACCCAACAGCATCCACAGCTCCAGCAGCAGCTGCAACAGAACCAACAGCATCCACAGCTCCAGCAGCAGCTGCAACAACGACAACAGCAACAGAAACAAATAATACAGCATCAACAACAAATGCAACAACAACATCATAAGATGCAACAGCAGCAAATGCTTCAGcatcaacagcaacaacaactacACATACAACAAGAGCAACAGTTAGAACAGCAACAACAAATACAACAGCAACAGCAAATACAGCAACAattacagcagcagcagcaacaacaaataGAACAACAGCAATTGCAGCAGCAACAACCCCAACATGTTCTAGAATACTACCCCAGCAGCCAGAACCCACCTACCCACCAACACCCTCACTCCCAGCCACCCGTGTTACTGCCCTCCCAAGAGCCCTGTGCTCAGGCAGCATCCTCCCCAGACCTCCAGGAGATGTCCCCAGACCCTCCAAACATCCCCCCCCAAACAGACTCCCAGCTCCCCCCCACGGAGACCCAGCTCCAACCTCCCCATATCCAGCTGCAGCCTCGAAGGTCCAGGAGACTCTCCAAGGAAGGTGGACCACCACCAGTTGACAACCCCTTCCTCATACCATCTGATGGGGCCCAGAATGGGGCCTCTGAGGAGCCAGGAGGAGCACCGAAGGCGGATGAAGTCCACGTTGCCCAGATGGCCCCTACAGGGGTCATCCAGAGCACACGCAGGAAACGGAGGGTCTCCCAGGAGGTTAACCTGGAGACGCTGGCCCAGAAAGCCTCAGAGATGGAGTCCCTACCGCCACACATCGTCAAGGCACAGCACCACAGGCCCTGGAGCCCCCAGAGACCAGCGCCAGGGCGAGGGACCATGGACAAGGATTCAGGGGGCCACAGTGCCAAGCGGCCCCGTGATGAGAGCATGAtgcccctggtcatccctgtgtCAGTCCCCGTACGAAGGCCAGACCCGTCCTCGTCCTCGTCCTCCCCAGACGGGGAGCACTCTACCCCGGGGACAGGCTGGCCACAGAGACCCTTCACCCTTCAGGACGTGACCAGTATGGATGGCAAACCCTCCGTCATTGTCACCCGCAGGCGATCTCTCAGAAACTCTCTGTCAGAGAGCTCAGGACAGAACggtggaatggagggagggaacgaCAACGACGGCAAGAAGCCCAAACGCCGTCCCCGGCCCGAACCCCTCTTCATCCCGCCTCCCAAGCCTGGCACCTTCATCGCCCCTCCTGTCTACTCCTGCATCACTCCCTACCAGAGCCACCTCCGCTCCCCTGTCCGGCTAATAGACAACCCCCTGACCATGCCGCCCTACACCCCCCCGCCCATCCTCAGCCCGGTGAGAGAGGGATCAGGTCTCTACTTTTctaccttcctctcctctgctgcATCCAGCCAGGGTCTGCCTCCAGCCAGGGTCTGCCTCCAGCCAGGGTCTGCCTCCACCCAGGGTCTGCCTCCACCCATCACGCCCAAATCAGCCACACGCAGCCTGCTGCGATCCAACAGCGTTGACATAACCCCACCTCTGCTCTCAACGATCGGTGAGGCCACTCCAGTCAGCATAGAaccGCGTATAAACATCGGTGTGAGGTACCAGGCAGAGGTACCAGAGCTGAGGCAGCGTTCAGCGGTCCAACAAGACCATCCCAAGGCTGAGCTGGTCTGGGCTCCTCTCCACGACCTGGAGGCTAAACCTGAAGACCAGGAGAGAGtggATGACCTCATGAACCTGGCGTGCTCAAGCGCTCTGCATGGTGGAGGGACCAATCAGGAGCTGGCTCTGCACTGCCTGTACGAGTGCAAGGGTGACATCATGGAAGCGTTGGCCCTCCTGCTATTGAAAAACCCCATCTTCCCAAAGAACCACCGTCTAGGATACTACCACTACTCCGggtCAGACAGCTGGACCCCAGTAGAGAGAAGTTGCTTTAACAAAGGGATCGCTGCCTATAAGAAAGACTTCTTCATGGTCCAGAAACTGGTAAGCACTAAGACGGTGGCTCAGTGTGTGGAGTTCTACTACAGCTATAAGAGGCAGGTGAAGACGGGTCGGAACGGAGCTCTGATCTACGGAGACATGGACCCACCTGAGAGCAGGAACACTGAGGAGGAGCTGGACCACAAGAGCTCTCAGAGCTGTCAGAGATTAGAATCTCggaaggaagaggaagacaaCAGGAATTGGGAGGGGTCAGTTGACAGGAAGCACCGGGGCTCCAGTCCAAGCAGGGTGACACAGACGTTACAGGCCACAGAGAACGCTGGAGCGGTCCTGGTGCTGAAGACACAGGAGGATGTGAGGAGAGACCAGATGTCTTCCTGGGTCAGTCACccccctcagccctctccctCGAAACCACGGCCGCCTCCCAAGACCGGGACCATATCAGGGACCAAGGGCCCCGCCGGACCAGAGGGAGAGTTCCCTTGCAAGAAGTGTGGCAGGATCTTCTACAAGGTGAAGAGCCGCAGTGCCCACATGAAGAGTCACGCGGAGCAGGAGAAGAAGGCCGCAGCGCTGAGGCAGaaggaggcggaggagagggcAGCGGCCCAGGCGGCAGCAGAGGCTGCAGCGTTACTGGCCGCCCGGCAGGACGGAGAACGGGAGGGGAACACAGCCGGAGGAGACAGCACAAACGATGACTCGTCtgaggaagatgatgatgaagaggaagatgaggactGGCACTAAGACCATAGAGATAGAAAACGAGCCCACCCCACCTGTCTTTGCCATTATGGCAAGTGTACGCTCAATCTATCTggcttagacagacagacagacagacagacagccctctCCACGGTCAGGGTGAGCGGTAacaaacagaacagagcagaactcTGAGGTCTCAGAACCCTAGCGCCCTTGAGTGTTCAGCTACGGCTACTAACACTCAAGGGACATTTTACGCCCTCTTGTTACGCCCTCTTGTTACGCCCCCCTTTTACGCCCTCTTGTTACGCCCCCCTTTTACGCCCTCTTGTTACGCCCTCTAGTTACGCCCTCTTGTTACGCCCTCTAGTTACGCCCTCTTGTTACGCCCTCTTGTTACGCCCTCTTGTTACGCCTGCTTTAGCAGCGTTTCTCTCTGGGAAAAAACTGTCTTTATAAACAAACTGCTTTTTTTTATTGTTTCATGGAACAGGATCTCCTATCTTGACACTTTCAGGGACAAGTTCTCTCACGTGTTTTCTCCCTCTTCCCTTTAACCTGCTTGTGAAGTGTTCAGGGGTTAACTCTCTCTCAGGCACACAGTAGGGTAGGAAAGAAAGccatgccatctctctctctaacaccaaTACTTTTCTTTCTCCTGTCTGCCATCCACCCCTggcttcttcctcttcctgtcagCACTttcagccaatcacaacacagcACACAGACTCATCAGGTGGGAACTATATAGCCACACCCTCAGCCCAGCCTTTAAAAACTAGAATAGTTTGTGATGCCTGGCAATGCAAGACTACATGAACCACAATGCAACCCGGCGTGGCCACTGTTTTCTCTACTCTCTGATCCTCCAGTTTGATATGTTATTATGAATAGAAGGACACCATATGAGTGATTGGGACCATGCAATATTGAAGTTGAAAGGACTTCCAGGTCATGAAAAGCCCAGATAGACTGATGTGGTGGTAAcaccaaagatggtggataaatgaagattTCCCACTCAGGCAGTTTACCATTGAAAAAAATGGTCAGTTCCAGTCTGCTTAAGGGGGTGGCTCTCCCATAGGCACCAATGCATTAGTAGCTGGGTCTGATCCGCTTCGTTCATTGACTATACATTAACCAGAAAAGGTGGGATGTCTCACTTCTTCCGTCTCTCGTAACACTGCCTGTGTGGAGGCTTACCTATATGTGAAGGAAGGAACCATTTAGAGAACAGAACACACATTGTTGTGCGAGTTTCTGCATTTTTCCTGTTTGGGACTTTTTCACTCACTCAAGGCTGTCAAAAGCTTGCACAGATGCGTCGGGTCCTCAGTTCACCGAACTGGTTTCATCTTAGTTTCAAGTGCTGTTCTCAGTTGGATCCCTACCCTGATCACTTGTTTTATAGTCATCATGTGGTGTTTCTCCTCACTGTCGAGGCCTTGGATGTTTTCAACACTTTATCTTTGGATGAACGACAATCAATTTTACAAAGGTTCTTTTTATATCCAACAAATTACTGTTGCTTTTTTGCTTATTATATCAAATTGTTAATGTTGTTTTTTGTTAATAATATTGTTATTAATGATGTCACAGTTGTCTCTTGTATTATTGTGATCTTGGATTGTTTTTGTGGCAGGTTGCTTTGGAGATCTCTTTCTCATATtgactgtagtgtagtgttattTAAGACATTGCTTTCGCTGTCTGCTTTGAACTGTGAGGTTTTAGAATTACATCTAAAGACAGTCTGAGTAGAGAAGAGATGTGAAACAGAATTGTAAATGTGCAGTAGATAGAAGAACCACGTGATCCCTGATGACAACACCCCCTCTTATTCCTTGTATCCAGATGTCACCCAAATTTAAAACGGTTTAGGTAaggtaagggtaggggttaaggtcagggtgagGGTTTAAAGCTAGGGTTTAGGGTATGGACATCCCAAGGATTCTGGGATAGCACTAACCACATCATTACGGCATGAAGAAAGAGTGAGGaaaacatgatgatgatgatgttgactgTTGAATGATGTTGACTTTAATGGGTATGTCCATTCTATTTCTATAGCCTATTCTATAGAAAAGGATGTCTCTACCTATCTGACTATCTTATTGTCGACATATCTCGTTCTGCCAAGctccatatctctatctctattgcCTCCTCCAAGCGCCAGACCAGACTCTATCTGTCGCCAAGGCAACAAGCGAGCAGGCTGAAGATTCTTCTCTTTAAGCAGTCAGCCACAGTggggagcagagaggaacagctCCAATTACCGGACCCAGTTAAACCTACCTGGGTActatgcactgtgtgtgtgtgtcagaggaggctggcGGGGAgggctataggaggacgggctcattgtaatggaatACATGGAACCGTATCAAACATTTACAttgtagtaatttagcagacacttttatccagagcgacttacaggagctattagggttaagtgccttgctcaaggacacatccaCATATTTTGTTGCCTAGTCAGCTCAGGAATTCCAAccaacaaccttttggttaccggcccaatgctcttatctcctagactacctgccaccacCAGAAACAacgtgtttgactccattccagcgattccattccagacattacaaacAGCCCAtactcctatagctcctcccaccagcctcttctggtgtgtgtgttagtgagtgtgtgaTGTGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTAATCATTCTggagtgtttgtgagtgtgtgatgtGTAATCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTAATCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtgatgtGTATGCATTCTggagtgtttgtgagtgtgtggaATGCCGCTTGCAAGTTTGCTTTTTCTAGTCAAATATCACTCTGAAATATAATTTAGCCAGTTGAGAGAAGAGGTTTTATCCTGACTATTTACTTTTGTAACCTCAATGTATCTCTCCTTAccctttttttttattattatttttctcccCACAAGATGGTCATGGGGAACTGTTTGTTTTGACATGTTATTTTAATACTGTAAAACAGAATTAAGGAGGAAGTTGAGGGAGGGCATGCCACGAAAGGCCAAGAAGCTGGAAGCCTTATTCACTTTCATTCAATTAGTTAAGGGAATAAAACACTTTACATTTGATTTACATTAAGAATATCTATGAATTAAACTCTATGAATGCATACTTTGTATGCTATTTTCCTATGGGGGTTCATTTCACACTAAGGATGTAAAATGGAATGGAATCTCAAGTGCTTTTTACTACAATGTAACTTATTTGGTTAAATTAGATTTTTACTATCTGTGTGTTTTTGTAATAAAAAATGGGGAAAGCACTGTTTATTAAAATGTTACAATACTCATGAAATAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2260324 lncRNA upstream 5004 35009509 ~ 35009730 (+) True G1977281
TU2260307 lncRNA upstream 31169 34983207 ~ 34983565 (+) True G1977265
TU2260300 lncRNA upstream 40353 34973442 ~ 34974381 (+) False G1977258
TU2260366 lncRNA downstream 31762 35088706 ~ 35100983 (+) True LOC100305155
TU2260369 lncRNA downstream 38075 35095019 ~ 35095474 (+) True G1977318
TU2260372 lncRNA downstream 51665 35108609 ~ 35108809 (+) True G1977321
TU2260375 lncRNA downstream 56678 35113622 ~ 35113829 (+) True G1977324
TU2260377 lncRNA downstream 57381 35114325 ~ 35114678 (+) True G1977326
XM_021585279.2 mRNA upstream 243714 34750884 ~ 34771020 (+) True LOC110505824
XM_021585277.2 mRNA upstream 328995 34681732 ~ 34685739 (+) True tmem121aa
XM_021585275.2 mRNA upstream 537587 34457515 ~ 34477147 (+) True tedc1
XM_021585273.2 mRNA upstream 562147 34446701 ~ 34452587 (+) False dnal1
NM_001165059.1 mRNA downstream 31750 35088694 ~ 35100987 (+) False LOC100305155
XM_036962418.1 mRNA downstream 110204 35167148 ~ 35240181 (+) True LOC110505832
XM_036962930.1 mRNA downstream 192375 35249319 ~ 35289163 (+) False LOC110505833
XM_036962929.1 mRNA downstream 192375 35249319 ~ 35289164 (+) False LOC110505833
XM_036962700.1 mRNA downstream 482853 35539797 ~ 35611701 (+) False LOC110504234
TU2259645 other upstream 283423 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 310840 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 532813 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 533455 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 533837 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 969589 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 1332327 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 2161317 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 2207836 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 2664190 37721134 ~ 37729904 (+) False G1980026

Expression Profile