RNA id: TU2261034


Basic Information

Item Value
RNA id TU2261034
length 309
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G1977925
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35694924 ~ 35695232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaagaactgggacattttcagattccAGGGATTTTGTGCACATCCTTACAACATGgggtcgtgcattatcatgctgaaacatgaggtgatggctgcagatgaatggcacgacaatgggcctcaggatctcgtcacagtatctctgcattcaaattgccatcgataaaatgcagttgtattcattgtccgtagtttatgcctgtccataccgtaaccccaccgccaccatgggacactgttcacaacgttgacatcagcaaaccactcatccacacaatgccatatacagtgtctaccatctgcccggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261033 lncRNA upstream 1276 35693416 ~ 35693648 (+) True G1977924
TU2261028 lncRNA upstream 9136 35685557 ~ 35685788 (+) True G1977919
TU2261025 lncRNA upstream 13145 35681276 ~ 35681779 (+) True G1977916
TU2261020 lncRNA upstream 25625 35669011 ~ 35669299 (+) True G1977911
TU2260972 lncRNA upstream 84798 35609851 ~ 35610126 (+) True LOC110504234
TU2261043 lncRNA downstream 15652 35710884 ~ 35711187 (+) True G1977934
TU2261053 lncRNA downstream 26803 35722035 ~ 35722272 (+) True G1977941
TU2261060 lncRNA downstream 34750 35729982 ~ 35730540 (+) True G1977947
TU2261061 lncRNA downstream 40362 35735594 ~ 35735919 (+) True G1977948
TU2261062 lncRNA downstream 41745 35736977 ~ 35737373 (+) True G1977949
XM_036962700.1 mRNA upstream 83223 35539797 ~ 35611701 (+) False LOC110504234
XM_036962702.1 mRNA upstream 83223 35539797 ~ 35611701 (+) False LOC110504234
XM_036962703.1 mRNA upstream 83223 35539797 ~ 35611701 (+) False LOC110504234
XM_036962701.1 mRNA upstream 83223 35547037 ~ 35611701 (+) False LOC110504234
XM_036962929.1 mRNA upstream 405760 35249319 ~ 35289164 (+) False LOC110505833
XM_036962865.1 mRNA downstream 169338 35864570 ~ 35866787 (+) True LOC110504235
XM_021585292.2 mRNA downstream 181211 35876443 ~ 35880427 (+) True LOC110505837
XR_005039580.1 mRNA downstream 225643 35920875 ~ 35923934 (+) False LOC118944336
LOC110504338 mRNA downstream 399237 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 406052 36101284 ~ 36112211 (+) True LOC110505842
TU2259645 other upstream 963613 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 991030 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1213003 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1213645 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1214027 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 331301 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 694039 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1523029 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1569548 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 2025902 37721134 ~ 37729904 (+) False G1980026

Expression Profile