G1977916


Basic Information

Item Value
gene id G1977916
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35681276 ~ 35681779 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2261025
tactcttgcgagctcgatacaaagtctatgaacaaggcgacaaggccagtaaactccttgcacatcagatccgtaaatccgaggcctcacgtttaatcccacaaataaggaccccgtctggtgccaccacagttatacataaagagatcaatgatcaatttaaacaattttactctgcgctatacacctctgaatcccctcaagacccttcgctgattgactccttctttaatggcttgaatatgccttcaattgatacagactcccatgactgtctagaagaagaatttacgcttgaggagattgcaacagcagtgtccgcaatgaaaagtggtaaatcaccgggtccggacggttttccaaccgaattttacaggacgttttctggtctgctttgcccattcttgtcccgactatttgcagagtgcctcaatacttcaaagctgccgcctagtctttatcaggcttcaatttcattactactaaagaaaaacaaagaccccc

Function

NR:

description
LINE-1 reverse transcriptase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2261025 True 504 lncRNA 0.44 1 35681276 35681779

Neighbor

gene id symbol gene type direction distance location
LOC110504234 LOC106602716 coding upstream 69575 35539797 ~ 35611701 (+)
LOC110505833 LOC106611286 coding upstream 392112 35249319 ~ 35289164 (+)
LOC110505832 mta1 coding upstream 441095 35167148 ~ 35240181 (+)
LOC100305155 LOC106611282 coding upstream 580289 35088694 ~ 35100987 (+)
LOC110505830 LOC106611281 coding upstream 624332 35012695 ~ 35056944 (+)
LOC110504235 LOC106611305 coding downstream 182791 35864570 ~ 35866787 (+)
LOC110505837 LOC106611304 coding downstream 194664 35876443 ~ 35880427 (+)
LOC118944336 NA coding downstream 239096 35920875 ~ 35923934 (+)
LOC110504338 LOC106611336 coding downstream 412690 36094469 ~ 36097074 (+)
LOC110505842 LOC106611334 coding downstream 419505 36101284 ~ 36112211 (+)
G1977911 NA non-coding upstream 11977 35669011 ~ 35669299 (+)
G1977880 NA non-coding upstream 76199 35604623 ~ 35605077 (+)
G1977879 NA non-coding upstream 85546 35595516 ~ 35595730 (+)
G1977878 NA non-coding upstream 88092 35592734 ~ 35593184 (+)
G1977919 NA non-coding downstream 3778 35685557 ~ 35685788 (+)
G1977924 NA non-coding downstream 11637 35693416 ~ 35693648 (+)
G1977925 NA non-coding downstream 13145 35694924 ~ 35695232 (+)
G1977934 NA non-coding downstream 29105 35710884 ~ 35711187 (+)
G1977941 NA non-coding downstream 40256 35722035 ~ 35722272 (+)
G1976689 NA other upstream 949965 34730027 ~ 34731311 (+)
G1976680 NA other upstream 977382 34701980 ~ 34703894 (+)
G1976575 NA other upstream 1199355 34481519 ~ 34481921 (+)
G1976574 LOC100194703 other upstream 1199997 34480904 ~ 34481279 (+)
G1976573 LOC100194703 other upstream 1200379 34480030 ~ 34480897 (+)
G1978080 NA other downstream 344754 36026533 ~ 36027737 (+)
LOC110505847 LOC106611313 other downstream 707492 36376220 ~ 36824709 (+)
LOC110504241 dnah14 other downstream 1536482 37161387 ~ 37222396 (+)
hivep2b LOC106611354 other downstream 1583001 37264780 ~ 37311200 (+)
G1980026 NA other downstream 2039355 37721134 ~ 37729904 (+)

Expression


Co-expression Network