LOC110506749


Basic Information

Item Value
gene id LOC110506749
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38056139 ~ 38059022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471028.2
ATAGTTTGACCGCATATGTTCAATAAATCCAACacgctgcaaggcaaacgcagctcTCATTGATTAATttaattctggtgtaccaaaatgcaatgactaTGTCGGTGTGTTCAAAGCGGGAGTGTTAGAAAATGTTTATGAACTCCTATACACCGCATTCATCCACTCAGAGGACCAAACACCAGATAATGACATGAATTAAGGAAAGAGACAAATGTTGCGGCAAGGAATCAAAACAACCACTTTAACAGTGACAACGAAATGGCCCTGAAGTTGAGAGTTCACCTGTTCTGTCCTGGTTACAAGCTTCTGAGAGTTTGCTATTGGACCGTTTGCTGTTCGGACTCCGATGGTGAACAGTGGTGCCAATGCCAACCAATGGATGCAAAGTAAATCATCCCTTAATCTGTTCACACAGCCTCTGTGCTGATCTTGTGGGACTGTCTTTTTATTCCAAAATGTGCCTCTTGGAAAATGTATTATGGAAAACAAATGATCATCTTGGAAAATAAGTAGTCTATGGCAAAACGAAGGCAATTTCATAATTCAACCACGATGGTGACATTACATCATCTCTAGTGTTGTCATGGAGATTAGAGCTGATCTATCGATATCGTGTGACAATCCCACCGATAACCGATATTCAAAAAATGTTAGTCTCATGCTTATCATTCTCATGATGTGTCATTATTGTCACTGTGTAAGAAATCAACATTTTAAACTAATTTCTTGGACAATTGCGCTTTGGGATGGCAATTTAAGAGAACTCAGTGTGGAACAACGGCACTTTTTAATTTCCTGCTGTAATTGGCAGATATATCGGTATTGGTACATTTTGTCCTCACAAAAATCACAATCTGACCCACAAACCCAATTTCAGTCGAATTCTAATGAAGATTGGACTAGGACCCATTGGCCCAATAATAGGCCTATGTTCATAGGCTGCTCAGTATGACAGGGTTGGTAGAGTATAGCAGCCTATACAACATAATGGCGGTTTGTTGAATGTGTCGAATGGCTCAACAACAGTCATTGAGCAGCTTCTGCTTTGATCTTTTCCTTTCATTAGGACTTTActtaaattgtatttgtatttattgtatttatttaaattgtagTAGACCAAGGTAACCACCAAAGAAAGTAATAAAATGTAACTCATTCAACATTGCATACATGGAGGTCCTCTCAGTCTGGGCCAGATTATGCTCCATCTCTAAACTCTCAGTGTGATGCAATATGAGGTGAAAGGCTGACAtctggtggtcatgcagtgtaaaTACATTATGTACTGAAAGAAGTGCAGTCAGGAAAGTCATGGGGAACTATTTAATTGGGCACCACACAAGGCAACATAGACTTTGGCTTGTTGTCATTACCTCACTtagaaatgtgttttgtttaaagACATAGCTGTTTCTTGACTCATGTTTGCTACCTCTGTTTCCATACAGTATGCTACTGTACATTGTGATGTATTGAACCAATGGCAGGCTTACTTGGACCTTATTATCAAGCTGAATGCAGTCCCTTTAACATCATATCCATGAACTGTTGTTATACTCTAGAACAGATATATAgtaagtagccttccacaagccagATCAGCTCATAGTAGCAGGAGCCTGTCCTGTTtgatgaggcagcttgatgtgaAGGATTGTGGTGAGGCAGCTTCATCATTAAAGGGTTGTGGATTTGTATCATTTCCCTCTAGTGGCTGAACAAAGCCATGCATCTCTTTCTCATCAGTAGCTCACATAGAGCAACGCTAGGCCAGCCACATCACATAGGCTCAGGATCTCTAAGAGATATCCTAACTCCATTTGACATCTCTTTGTTTCTCCTATCACCGTGGATTACCCCTGACAGTATGACTGTGGACTGACTCCTTAATAGAGGAAGCCAAAGGACTTTACCCAGAgatctgacagacagacatacggATATACTGTAGCTAGCAAATAGGATTTCTGTGGCTTATCTCATAAACCAATTTCCTGTGCTTTTAGCCAAGAGTACAGTTAATTTTTCATAGCATAGGCCTGTTTGTGGCTGAAGCAGAGTAAATGTAACATCCATTTGCCTACAATATCCTGGGCCTGTCACTGCAGAGCAGGGCTTAATTTCATGCACTGATACATGCAGCCATCTGCGCAGACTGACACGCAGGGAGtgggacacacacgcacgcactgacgcaggtgcacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471028.2 True 2214 mRNA 0.41 3 38056139 38059022

Neighbor

gene id symbol gene type direction distance location
LOC118944515 NA coding downstream 255403 37798150 ~ 37800786 (-)
LOC110506744 LOC106562437 coding downstream 747893 37304850 ~ 37308246 (-)
LOC110506741 LOC106587594 coding downstream 1132657 36914774 ~ 36923482 (-)
LOC110506740 LOC106562403 coding downstream 1142479 36793286 ~ 36913660 (-)
LOC110511520 LOC106587590 coding downstream 1272174 36770889 ~ 36783965 (-)
LOC110506750 LOC106562417 coding upstream 67067 38126089 ~ 38222653 (-)
LOC110506754 LOC106587610 coding upstream 241611 38300633 ~ 38333271 (-)
LOC110506753 LOC106587607 coding upstream 276929 38334242 ~ 38373760 (-)
LOC110506757 LOC106562446 coding upstream 352101 38411123 ~ 38504156 (-)
LOC110526638 LOC107739100 coding upstream 743317 38802339 ~ 38819334 (-)
G2027461 NA non-coding downstream 92269 37963628 ~ 37963870 (-)
G2027451 NA non-coding downstream 102383 37953553 ~ 37953756 (-)
G2027447 NA non-coding downstream 105262 37950664 ~ 37950877 (-)
G2027446 NA non-coding downstream 106468 37949459 ~ 37949671 (-)
G2027442 NA non-coding downstream 124233 37931706 ~ 37931906 (-)
G2027967 NA non-coding upstream 25502 38084524 ~ 38085606 (-)
G2028017 NA non-coding upstream 43653 38102675 ~ 38103673 (-)
G2028022 NA non-coding upstream 55860 38114882 ~ 38115272 (-)
G2028027 NA non-coding upstream 63087 38122109 ~ 38122662 (-)
G2027052 NA other downstream 564723 37490852 ~ 37491416 (-)
G2026993 NA other downstream 635102 37420411 ~ 37421037 (-)
G2025757 NA other downstream 1712705 36343156 ~ 36343434 (-)
LOC110506721 LOC106562390 other downstream 2507382 35401501 ~ 35548790 (-)
G2028777 LOC106587714 other upstream 1167341 39226363 ~ 39227059 (-)
G2028779 NA other upstream 1170107 39229129 ~ 39233948 (-)
pldn pldn other upstream 2139794 40197134 ~ 40200916 (-)

Expression


Co-expression Network