pldn (pldn)


Basic Information

Item Value
gene id pldn
gene name pldn
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40197134 ~ 40200916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963147.1
CTCCTCAgaaggatgagctggccaatcagtggtcTAGAAGAGGATGAGCTGGACAATCAGCAGTCCACTTGCATTAATATTTTTAATAACCagtatacgcccacaccattccaacacagaaaagctttGTTGACATACTTAATTACCattttttggaaggaaaactatttcactgaTATTGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAATTCAGCCTGACTCCCCAGGACTCTCGTCCTACAGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA
>XM_036963148.1
ATGTTATACTCCTCAgaaggatgagctggccaatcagtggtcTAGAAGAGGATGAGCTGGACAATCAGCAGTCCACTTGCATTAATATTTTTAATAACCagtatacgcccacaccattccaacacagaaaagctttGTTGACATACTTAATTACCattttttggaaggaaaactatttcactgaTATTGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA
>XM_021585493.2
AGTTTGAGAAACAAGTAATCAAGCTAAATTCGTTCAAACAGGAAGTTCAAACACAGTCACATGAGTGACGCCCTGTCACATGATGTTTTCCAGACGTTGCCATTATTGATGGAGAGCTCGTTTCAAAGGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA
>XM_021585492.2
AAAATTACCGATCGTCAGCCTTTTCTAGGGGAGACCATTTCCTCACTGTGATTGTATTCAAAACCATTTCTCTAACGTCAACATCGCACCGTTAATAGTTTGAGAAACAAGTAATCAAGCTAAATTCGTTCAAACAGGAAGTTCAAACACAGTCACATGAGTGACGCCCTGTCACATGATGTTTTCCAGACGTTGCCATTATTGATGGAGAGCTCGTTTCAAAGGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAATTCAGCCTGACTCCCCAGGACTCTCGTCCTACAGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA
>NM_001160589.2
AGACGTTGCCATTATTGATGGAGAGCTCGTTTCAAAGGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAATTCAGCCTGACTCCCCAGGACTCTCGTCCTACAGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAACAAGCTCTGTTGGAACTCAATCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGGACTGATGGATGTTTGTTTCAGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAA
>TU2321318
ctcttgacCAGTCAAAACCAAGTCATCCTGCTGGACACACTGGACCAAGAAGTCACCAAATTCAGAGAGTGCAACTCCCTACTGGATCTAAACTCACTGTTCACAGAGGCCAAGTTTTATCACGGTAAACTGGTGAACATACGTAAAGACATGATCATGCTGCACGAGAAGACAACTAAACTAAAGaaaAGAGCGTTGAAGCTGCAGCAGCAGAGACAGAAGGAGGTGATGGAgaaagaacaacagagagagaaggagctggagagagagaggcagctgaTTGCCAAACCTGCCCAGAGAACATAGAACCATCCATGAACTCTGTCCTAACTCTGTCACTGCCAACTATACTATAGAGCCAATGACGAGGGATGCAGCACACATGTCGAGGGCTCCGGTCCTGACCCCATCTCTGGTTGTGGAACAGTAGACCAACTCTATTCCTCAAGATGACACAGTTCATCCATGGTTGTTGTCAGAAAGTCAGACATGATTTGGTCTCTTGTATGTAGAGGTGTTAGGACAAGTACTGCTTGTAGGTAGTTTTATATTCAGAGGTGTCAAGACGATTACTGCTCCTTGTTAGTTTTTGTGGCCAATCATGCTGTTTAGATCAGAAACAGCACACGCCAGCAGTGATTATTCCTCACTTCCTCCTAAATGGCTGTAATAATAGAGATGTCTGAGGTGAATAAAAGAGAAGAGCAGATGAAGTCAATCAAAA
>TU2321319
GAGAAACAAGTAATCAAGCTAAATTCGTTCAAACAGGAAGTTCAAACACAGTCACATGAGTGACGCCCTGTCACATGATGTTTTCCAGACGTTGCCATTATTGATGGAGAGCTCGTTTCAAAGGCTGTAGAATCAGACAGTGACGAACAAcatggagacagaggggagggcaGATGAGAGTTCCTCGTCTCAGCGTGACCCTCCTCAGAACACTGGCAGCTACGAATTCAGCCTGACTCCCCAGGACTCTCGTCCTACAGAGGACTCCCAGCCTGCAGAGAAATCAGTCCCTATTGAAGAGGCCATTGTAGTGGACAGAAAGGCCATAGAGAAACTGACAGAAGGCCTGCTCTCTCACTACCTGCCTGACCTCTACAGCTCCAAAC

Function

symbol description
pldn Involved in eye pigment granule organization and synaptic vesicle recycling via endosome. Located in postsynapse of neuromuscular junction and type I terminal bouton. Part of BLOC-1 complex. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 9. Orthologous to human BLOC1S6 (biogenesis of lysosomal organelles complex 1 subunit 6).

NR:

description
biogenesis of lysosome-related organelles complex 1 subunit 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963147.1 False 1175 mRNA 0.46 6 40197134 40200019
XM_036963148.1 False 1147 mRNA 0.45 6 40197134 40200027
XM_021585493.2 False 1087 mRNA 0.46 6 40197134 40200820
XM_021585492.2 False 1219 mRNA 0.46 6 40197134 40200916
NM_001160589.2 False 1048 mRNA 0.47 6 40197140 40200729
TU2321318 False 724 lncRNA 0.45 3 40197134 40198466
TU2321319 True 386 TUCP 0.50 3 40198816 40200815

Neighbor

gene id symbol gene type direction distance location
LOC110526651 LOC106562502 coding downstream 46358 40138871 ~ 40150776 (-)
LOC110513022 LOC106587669 coding downstream 60443 40044093 ~ 40136691 (-)
LOC110516672 NA coding downstream 153437 40039396 ~ 40043697 (-)
LOC118944392 NA coding downstream 388371 39807917 ~ 39808763 (-)
LOC110506772 LOC106562440 coding downstream 930922 39257054 ~ 39266212 (-)
LOC110506132 LOC106562499 coding upstream 12496 40213044 ~ 40269852 (-)
LOC110506134 LOC106587633 coding upstream 95208 40296124 ~ 40307911 (-)
LOC110519217 LOC106587666 coding upstream 134628 40335544 ~ 40365947 (-)
dut dut coding upstream 462602 40663518 ~ 40667842 (-)
LOC110506139 slc12a1 coding upstream 479505 40680421 ~ 40736226 (-)
G2029583 NA non-coding downstream 8796 40188081 ~ 40188338 (-)
G2029582 NA non-coding downstream 17338 40179207 ~ 40179796 (-)
G2029581 NA non-coding downstream 19862 40176674 ~ 40177272 (-)
G2029580 NA non-coding downstream 21117 40174367 ~ 40176017 (-)
G2029558 NA non-coding downstream 24558 40167663 ~ 40172576 (-)
G2029588 NA non-coding upstream 14521 40215437 ~ 40215835 (-)
G2029589 NA non-coding upstream 14936 40215852 ~ 40216147 (-)
G2029590 NA non-coding upstream 17197 40218113 ~ 40218364 (-)
G2029591 NA non-coding upstream 20161 40221077 ~ 40221307 (-)
G2028779 NA other downstream 966324 39229129 ~ 39233948 (-)
G2028777 LOC106587714 other downstream 970075 39226363 ~ 39227059 (-)
LOC110506757 LOC106562446 other downstream 1692999 38411123 ~ 38504156 (-)
LOC110506753 LOC106587607 other downstream 1848778 38334242 ~ 38373760 (-)
G2027052 NA other downstream 2705718 37490852 ~ 37491416 (-)
G2029844 NA other upstream 306830 40507746 ~ 40508282 (-)
G2029858 fbn1 other upstream 350263 40551179 ~ 40567512 (-)
G2030106 NA other upstream 574798 40775714 ~ 40778988 (-)
G2030157 NA other upstream 686687 40887603 ~ 40888684 (-)
pldn pldn other upstream 350 40197134 ~ 40200916 (-)

Expression


Co-expression Network