LOC110516672


Basic Information

Item Value
gene id LOC110516672
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40039396 ~ 40043697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039825.1
tatcgactgccgcaaaagcatgctctgTTTTTATGTCTTATGAATTTGTAGTTCGCAAATTTCTGTGAAAATAGACAAAATGCTTTTTGATCTTCGGCCAATAGAGagagcagagtacagtatattGAAAGTCTGTTGGTCGAATAGCAGATTATTTTAACCACTTCCTGTCTAGGCTTGATAAACCAGTCTACTTGTTACCTGAAGGGCGTGGTTATATGGGGGCCAGTGAATCTGCCGTTTACTCACATTGTTCGTAACAGTGCTCACCTGCTCTCACTTTGTCTCTTTCCCATTGCtctcacacacaaaaacacatcccAGAGAGGAGAAACTACCAAGAGAGAAGAATCATGTCTGTGGAAGTCCACATAGAATATTGTAGTGGATGAGGGTACGAGTCTCGCTATCAGGACCTAGCATCTGCCATCAAGCGGAACGTTCCTGATGTGACGGTGACGGGAACCACAGGGCGGCGCtCCAGTTTCGAGGTAACAGTGAATGGTAAATTGGCCTACTCTAAACTGGAGGCAGGAGGATTCCCAGACACCAAGGAGATGGTGGCGATGGTGAAGGAGGTGAGCCGTGGAGGAAAGGTCGAGAAAGTGAAGAAGAAGAATAATAAGTGTTTTCTCCAATAGATGAGTGGTtattgagagaaggagagtgttTTTTTAAGATCCTGGGTCCTGATCTGATTCTATTAATGATTGTTCACAATGAAACTAGGGATGTGAACATGAAGTCTACAGTCATTTCAACTCTGTGATCTGAGGGAAATactctcatcctgtgtctccgtGTTATACTGTCATGTCTTATGTTATTCCTTGCCTGTTTTTATTTCCTTATACAGACCAAGATATTATAGACTGACTGGCATTTAGTTTTACATTCTAAAAATATTGTACTCAATGTAGACTAGACCTCTGCAGTTGAATAGGCTGTACGTGTATTTTTAAATGATCAAATAAATTCTAGGAATCAATTAGTATTGAGTTTGTGTGTTGGGAGGGTGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTCCTGGTGTTGTTGGACATTTCCtggtgttgttgtgttattattGGATGTTGTGCCAGGCAATCTTTCCTATCTTCACTTTGCCTCTTTCACTTTCTTTCTTAGCGGGTGTGATGATGCAATAGATATACTGCCACGGCCTTTATAGCGGTCAAGGGATTTTATTTGATCTTATCTGATTTTGTGTGTAGGCCGAGACTGGATTCTATCCCCAAAAATGTTATTCCTCTGTGTGTTATATAATTGTAGAGGTACAAAGTCTTTAGTATTAGTTTTTATATGGCTGTATAAAGATGACAGTTTATTATCAAACTTGTGATAGAGATCACACTTCAGCCAAGAGGGGAATTTAATGCAGTTGAGATGTGGGAAAGGGAATTACCACTCTGCCATCTGGAGTTTTACTACATTTTTACCAAAACTGGATTCCATGTAACTTAGAGGTGATTGATTATTCATTATATCCACTCTATTAGCCTCTGTCAAATGCATTTTAAACTGTAATACATCTGTTCTGTGATGTCCTCCAGCATATTGGAGAATATTCTAGAATCTGACCCTTtctacccctctatctctctggcccccaTCTAACCATGTCCTTCAGGTAACAGGTGGATAGAGGGAGAGTCACGCAGCTTATCTGTGACAGTGCCCACCTGCTCTCACATCTCTTTcgcattgttctctctctctctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagagaagaATCATGTCTGTGGAAGTCCACATAGAATGTTGGGTGGTTATTGTTTAACGTTGTACTACATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGAGATCTGTTAATGTCTACTCTACAATGTTAGGGGATCTGTTGTTATACTAAAGAAAACAGTGAGACAGTGAACAAACTGTCTGAATGTGTTGGTGTGGAACCAATAGACTTCCTATTGGCTCAGGTTATTGATTTAAAGAGAGAGTTTGCAGACAAAAGCAAAACATTGACATGATTTTCCAATTAGAGAAACTCATTATTTACATCATCAGTCTAACATTTACCAACATTAACTACCCTCTCCATTTCTATTGTCAAGTTATAGATTTGACATGCCATgtgcagcctgtgtgtgtgtttacggtgTGTTATGCTAATGCAAACATCAAAACGAGCTCCCAGGGGGGGCCTAGGACCGAGTTCGGGAAACCCTGCTCCAGTAGATGAGTGGAGAGCAAGaggtggaaaggagagagggggaggacagtgtTTTATAAGATCCTGAGTACTGACCTGATTCTATTAATGATTGTTCACATTGAAACTAGGGATGTGAACATGGAGACTAGTTAGTTAAATAAAGcaaggcacgtcagttaagaaccaattcttattgacaatgacggctaaacctggacgatgctggaccaattgtgcgccgccctatgggactcccaatcacggccggctgtgatacagcctggaatcttccagggtctgtagtgacgcctcttgcactgagatgcggtgtcttagaccgctgcgacacCAGGGAGCCCCTAGAGTAATTTCAACGGTCTGTGATTTAAGGAAAATACTCTCATCCTGTCTGGTTTATACTGTTATGTTATGTTGTTATTCCTATGTTTTTATTTCATGATACAGACAGGGATATTATTTAGACTAGCATTTAGATTTATATTCTAGAAGTTATATTCTACTCAATATAGATCTCTGCAGTTGTACTTGTATTTTTAAATGATCAAATAAATGAAATCAATCCGt
>TU2321271
ATTTGACATGCCATgtgcagcctgtgtgtgtgtttacggtgTGTTATGCTAATGCAAACATCAAAACGAGCTCCCAGGGGGGGCCTAGGACCGAGTTCGGGAAACCCTGCTCCAGTAGATGAGTGGAGAGCAAGaggtggaaaggagagagggggaggacagtgtTTTATAAGATCCTGAGTACTGACCTGATTCTATTAATGATTGTTCACATTGAAACTAGGGATGTGAACATGGAGACTAGTTAGTTAAATAAAGcaaggcacgtcagttaagaaccaattcttattgacaatgacggctaaacctggacgatgctggaccaattgtgcgccgccctatgggactcccaatcacggccggctgtgatacagcctggaatcttccagggtctgtagtgacgcctcttgcactgagatgcggtgtcttagaccgctgcgacacCAGGGAGCCCCTAGAGTAATTTCAACGGTCTGTGATTTAAGGAAAATACTCTCATCCTGTCTGGTTTATACTGTTATGTTATGTTGTTATTCCTATGTTTTTATTTCATGATACAGACAGGGATATTATT
>TU2321267
GTGAATCTGCCGTTTACTCACATTGTTCGTAACAGTGCTCACCTGCTCTCACTTTGTCTCTTTCCCATTGCtctcacacacaaaaacacatcccAGAGAGGAGAAACTACCAAGAGAGAAGAATCATGTCTGTGGAAGTCCACATAGAATATTGTAGTGGATGAGGGTACGAGTCTCGCTATCAGGACCTAGCATCTGCCATCAAGCGGAACGTTCCTGATGTGACGGTGACGGGAACCACAGGGCGGCGCtCCAGTTTCGAGGTAACAGTGAATGGTAAATTGGCCTACTCTAAACTGGAGGCAGGAGGATTCCCAGACACCAAGGAGATGGTGGCGATGGTGAAGGAGGTGAGCCGTGGAGGAAAGGTCGAGAAAGTGAAGAAGAAGAATAATAAGTGTTTTCTCCAATAGATGAGTGGTtattgagagaaggagagtgttTTTTTAAGATCCTGGGTCCTGATCTGATTCTATTAATGATTGTTCACAATGAAACTAGGGATGTGAACATGAAGTCTACAGTCATTTCAACTCTGTGATCTGAGGGAAATactctcatcctgtgtctccgtGTTATACTGTCATGTCTTATGTTATTCCTTGCCTGTTTTTATTTCCTTATACAGACCAAGATATTATAGACTGACTGGCATTTAGTTTTACATTCTAAAAATATTGTACTCAATGTAGACTAGACCTCTGCAGTTGAATAGGCTGTACGTGTATTTTTAAATGATCAAATAAATTCTAGGAATCAATTAGTATTGAGTTTGTGTGTTGGGAGGGTGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTACAATAATGCTGTTGGACATTTCCTGGTGTTGTTGGACATTTCCtggtgttgttgtgttattattGGATGTTGTGCCAGGCAATCTTTCCTATCTTCACTTTGCCTCTTTCACTTTCTTTCTTAGCGGGTGTGATGATGCAATAGATATACTGCCACGGCCTTTATAGCGGTCAAGGGATTTTATTTGATCTTATCTGATTTTGTGTGTAGGCCGAGACTGGATTCTATCCCCAAAAATGTTATTCCTCTGTGTGTTATATAATTGTAGAGGTACAAAGTCTTTAGTATTAGTTTTTATATGGCTGTATAAAGATGACAGTTTATTATCAAACTTGTGATAGAGATCACACTTCAGCCAAGAGGGGAATTTAATGCAGTTGAGATGTGGGAAAGGGAATTACCACTCTGCCATCTGGAGTTTTACTACATTTTTACCAAAACTGGATTCCATGTAACTTAGAGGTGATTGATTATTCATTATATCCACTCTATTAGCCTCTGTCAAATGCATTTTAAACTGTAATACATCTGTTCTGTGATGTCCTCCAGCATATTGGAGAATATTCTAGAATCTGACCCTTtctacccctctatctctctggcccccaTCTAACCATGTCCTTCAGGTAACAGGTGGATAGAGGGAGAGTCACGCAGCTTATCTGTGACAGTGCCCA

Function

NR:

description
migration and invasion enhancer 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039825.1 False 3348 mRNA 0.40 4 40039396 40043697
TU2321271 False 574 lncRNA 0.46 1 40039502 40040075
TU2321267 True 1569 lncRNA 0.40 4 40040947 40043469

Neighbor

gene id symbol gene type direction distance location
LOC118944392 NA coding downstream 230633 39807917 ~ 39808763 (-)
LOC110506772 LOC106562440 coding downstream 773184 39257054 ~ 39266212 (-)
LOC110506771 LOC106562441 coding downstream 785550 39243039 ~ 39253846 (-)
LOC118944513 NA coding downstream 797583 39236314 ~ 39241813 (-)
LOC110506770 NA coding downstream 814842 39182572 ~ 39224554 (-)
LOC110513022 LOC106587669 coding upstream 396 40044093 ~ 40136691 (-)
LOC110526651 LOC106562502 coding upstream 95174 40138871 ~ 40150776 (-)
pldn pldn coding upstream 153437 40197134 ~ 40200916 (-)
LOC110506132 LOC106562499 coding upstream 169715 40213044 ~ 40269852 (-)
LOC110506134 LOC106587633 coding upstream 252427 40296124 ~ 40307911 (-)
G2029544 NA non-coding downstream 61462 39977210 ~ 39977934 (-)
G2029543 NA non-coding downstream 63787 39975405 ~ 39975609 (-)
G2029542 NA non-coding downstream 64559 39974180 ~ 39974837 (-)
G2029528 NA non-coding downstream 71179 39966639 ~ 39968217 (-)
G2029525 NA non-coding downstream 101007 39934703 ~ 39938389 (-)
G2029555 NA non-coding upstream 30203 40073900 ~ 40074762 (-)
G2029570 NA non-coding upstream 93125 40136822 ~ 40137036 (-)
G2029560 NA non-coding upstream 107946 40151643 ~ 40159254 (-)
G2029572 NA non-coding upstream 116132 40159829 ~ 40160199 (-)
G2029579 NA non-coding upstream 122965 40166662 ~ 40167388 (-)
G2028779 NA other downstream 808586 39229129 ~ 39233948 (-)
G2028777 LOC106587714 other downstream 812337 39226363 ~ 39227059 (-)
LOC110506757 LOC106562446 other downstream 1535261 38411123 ~ 38504156 (-)
LOC110506753 LOC106587607 other downstream 1691040 38334242 ~ 38373760 (-)
G2027052 NA other downstream 2547980 37490852 ~ 37491416 (-)
G2029844 NA other upstream 464049 40507746 ~ 40508282 (-)
G2029858 fbn1 other upstream 507482 40551179 ~ 40567512 (-)
G2030106 NA other upstream 732017 40775714 ~ 40778988 (-)

Expression


Co-expression Network