G2029560


Basic Information

Item Value
gene id G2029560
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40151643 ~ 40159254 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2321321
CCAAGGCAAAGCAGGAAGATATTTTTTCGTCTGCAACTTCGGGAATTTAGCCAGAAGGAGTGTGTCGCTCAGGCCCTGGGGAGAgtggtgtgtgtcagtgtgtgttacaGAAACACCAGCAGtgagtgtatgtctgtctgtaatctGCTTCCGCCGGCTGTTTGTGGCATCGGCTGTGAAGTGAACAGGAAGACAGAGggttgaagagagagaaaaagaaagaaagagaagagagaggaagctgcTGTCAGCATGACTGAGTTCTGGGTGTGTTTCAGCTGCTGCATTGGAGAGCAGCCTCAgcctAAGAGGCGGCGGAGGATAGACCGTTCAATGATCGGAGAACCAACCAACTTTGTTCACacaacacacgtaggctcaggaGACATGGGCGTTGGGCTCTCATCAgtgaactCAGTTCAGGCCCAGATGAAATCTAAAGGAGGTTATCAAGGAGGGTCTGAGAGCAATCAGGAATAATGAGACAGATAAGAAGCCTGTGCTAACTACTGCTGTAGATCTGAAGAGGAGGCGTTGTAAAGACACTCTTACCTGAACCAGACAAAGGACCAAACAATGAAACCACCCAGGAACGTGTATATAATTCATTTATATTAAATCActgctatctgtctgtctgccatgcTGTTGCACTGTAATAGTAGAAAACGGATcacaatcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcctgtgtgaaCAAATGTTTTACTCAACTGTTCAGGAGTGTGTGGTCGTATTTTTAGGCCTTGCCTGTATTTATAGTCGGATTTGTGGAAAAATTACCTTTCATGTGGTGGCTGGGCCATTGTGGAGATATGAGGCACATGATTAGTAGTATCTGCTTCATTATCAAATCATAAACTACAGACTTGAAATGTCTAtctgtttgtgtcccaaatggaaccctagtccttatatagtgtgctacttttgaccagagacacatgggccctggtcaaaaataatgcactatatagggcataggttGAAATTGGGGACAGAGACCATGTTAACCGCTTTATTCTGTTAAACATCCCATGTTCTTTGAGTTGCCTTCAGGAGTAAGTAAAGAATGCTGTTTTCCAATAAACTTGAAATGTGTAGGTAGGGCACACTGGACCATTTTGTTTCTTGTACACTTGTTCAGAAGCTTTTAAGCTTTTGTATTGATTTCGGCCAATGTGTTTTTATACATGTAGTATTTTTCTCATTCATTAGCTAGAATCTTAATAAAAAAATGTTCTATGCCA

Function

NR:

description
PREDICTED: CDC42 small effector protein 2-A-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2321321 True 1283 lncRNA 0.43 5 40151643 40159254

Neighbor

gene id symbol gene type direction distance location
LOC110526651 LOC106562502 coding downstream 867 40138871 ~ 40150776 (-)
LOC110513022 LOC106587669 coding downstream 14952 40044093 ~ 40136691 (-)
LOC110516672 NA coding downstream 107946 40039396 ~ 40043697 (-)
LOC118944392 NA coding downstream 342880 39807917 ~ 39808763 (-)
LOC110506772 LOC106562440 coding downstream 885431 39257054 ~ 39266212 (-)
pldn pldn coding upstream 37880 40197134 ~ 40200916 (-)
LOC110506132 LOC106562499 coding upstream 54158 40213044 ~ 40269852 (-)
LOC110506134 LOC106587633 coding upstream 136870 40296124 ~ 40307911 (-)
LOC110519217 LOC106587666 coding upstream 176290 40335544 ~ 40365947 (-)
dut dut coding upstream 504264 40663518 ~ 40667842 (-)
G2029570 NA non-coding downstream 14607 40136822 ~ 40137036 (-)
G2029555 NA non-coding downstream 76881 40073900 ~ 40074762 (-)
G2029544 NA non-coding downstream 173709 39977210 ~ 39977934 (-)
G2029543 NA non-coding downstream 176034 39975405 ~ 39975609 (-)
G2029572 NA non-coding upstream 575 40159829 ~ 40160199 (-)
G2029579 NA non-coding upstream 7408 40166662 ~ 40167388 (-)
G2029558 NA non-coding upstream 8409 40167663 ~ 40172576 (-)
G2029580 NA non-coding upstream 15113 40174367 ~ 40176017 (-)
G2029581 NA non-coding upstream 17420 40176674 ~ 40177272 (-)
G2028779 NA other downstream 920833 39229129 ~ 39233948 (-)
G2028777 LOC106587714 other downstream 924584 39226363 ~ 39227059 (-)
LOC110506757 LOC106562446 other downstream 1647508 38411123 ~ 38504156 (-)
LOC110506753 LOC106587607 other downstream 1803287 38334242 ~ 38373760 (-)
G2027052 NA other downstream 2660227 37490852 ~ 37491416 (-)
G2029844 NA other upstream 348492 40507746 ~ 40508282 (-)
G2029858 fbn1 other upstream 391925 40551179 ~ 40567512 (-)
G2030106 NA other upstream 616460 40775714 ~ 40778988 (-)

Expression


Co-expression Network