LOC110519217 (LOC106587666)


Basic Information

Item Value
gene id LOC110519217
gene name LOC106587666
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40335544 ~ 40365947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963650.1
tctctctctctctccctctctgtctccctctctttccaccaGTGACAGCTGAGTGGCTGGGAGCTAATTGCTGTTGCGTGAGGTCAGAGAGACATTTATCTGACTGAGCTAGCCTTCCCTGCTAGcccacaacagacagacagacggacagggagGATGTTGCACAGCTCAcactacagagaggagagactggctGCTAAAGCACTGACTAACTGAGAAGTCCCAgggacatgcacacacatacatacactctttctatctctctctctctctctctctctcacacacacacacatacatccacaTACCCACAGACTCCTCTGACactcacacctacacacacacagcttgtgtGTAAGTAATCAGGAGCAGTGGGATCACAGTAACTCTAAAGCTTCTAAGGAAGAGGAACGCCACTAACTGTTTCATCTCTGGACGCTCAATACTAATCTCTGGCCTCCACAGAACCCCTGAAACATCCGGAAACAGACGGAAGCAGACAAGACCATGTCTGCTGTTGGATGACGGTCTCCTCTGCCGGGATCACACAGCCGACACACAGTGAGGattacactgagacagacatCAACATAAAGGCTGGCCTCATtcatacagagagacagtgagacagacggACATCAACCTAGAGCCTTGTGTCCTtacaacagagagacagacaacaaaacagagagagacatcacacaagTGCCTAGTCACTCTCCAACCCTCCTACCCTTCACCCACTCCACCTCCCACCAGCTGGCCTCAGCACCCCAGCCAGGGGTTACAGGTCACAGGTCCGGGCACAGGTCATCCAGGCTCCTAGTGAACTGCGCTTGGAGggcactctgttctgttctgtctgccGGAGCAGACAGCAGTATTTCAGCATGTTGTCCGTGGCGCCCCACAGCAGTGCATTATAATGCCCAGATGGATGCCACTGCCATGCAACCTGCCTAACTTGCTGTCGGGACTGTACCTTCACATCATCTTCCTGCTGGGCAGCGTGTGTGTGGCCTGCAGCAACTGCACACCCGAGCAGCTAGCCGCCATCATGAACTGCTCCAAGCACGAGCGCCATGCACGGAACTACGACTACATGGAAGGGGGAGATGTACGCATACGACAGCTGTTCAGCCGGACACAGTGGTTCCTTACCGTTGACGACTACGGCAACATCAACGGGACACAAGACCCCACCAACTGTTACAGTATCCTGGAGGTCCGTACAGTGTCCGAGGGAGGAGTGTTAGCTATCAAAGGAGTGAAGAGTCAGTACTATATCTCCATGAACAGGACTGGCCTACTGCAAGGCAAGAAAATCTACAATGAGAACTGCAACTTCAAGGAGATTTTCCTAGAAAACTACTTCAACGCTTACTCGTCTGTTAAGTCGAGTAGAGACGGCAAGGAGATGTTCATTGCTCTGTCTCAAAAGGGCAGACCACTGAGAGGGAAGAAGACCAGGAGGGAACACATCGCCTCCCACTTCATTCCCATGAaatgcagagaggaggagagcactgGCGTCTGAGAGAAGGAGACTGAAAAAGGAAGAGGTGACTGGAGcctgagaggaagagaggactgaaagaggagaggaggagaggactgaaagaggaaaggactgaaagaggagaggagattactTAAAAAGTAGGAGAAGACTGAAAGAGGAAAGGACtgaaaaag

Function

NR:

description
fibroblast growth factor 7-like

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963650.1 True 1695 mRNA 0.51 4 40335544 40365947

Neighbor

gene id symbol gene type direction distance location
LOC110506134 LOC106587633 coding downstream 27633 40296124 ~ 40307911 (-)
LOC110506132 LOC106562499 coding downstream 65692 40213044 ~ 40269852 (-)
pldn pldn coding downstream 134628 40197134 ~ 40200916 (-)
LOC110526651 LOC106562502 coding downstream 184768 40138871 ~ 40150776 (-)
LOC110513022 LOC106587669 coding downstream 198853 40044093 ~ 40136691 (-)
dut dut coding upstream 297571 40663518 ~ 40667842 (-)
LOC110506139 slc12a1 coding upstream 314474 40680421 ~ 40736226 (-)
LOC110519157 slc24a5 coding upstream 438156 40804103 ~ 40832292 (-)
LOC118944423 NA coding upstream 505485 40871432 ~ 40873618 (-)
LOC110519559 LOC106562535 coding upstream 572083 40938030 ~ 40983650 (-)
G2029619 NA non-coding downstream 33903 40301428 ~ 40301641 (-)
G2029618 NA non-coding downstream 37927 40297418 ~ 40297617 (-)
G2029616 NA non-coding downstream 40890 40294307 ~ 40294654 (-)
G2029615 LOC106562504 non-coding downstream 43205 40290170 ~ 40292339 (-)
G2029802 NA non-coding upstream 28464 40394411 ~ 40475370 (-)
G2029800 NA non-coding upstream 30741 40396688 ~ 40485446 (-)
G2029814 NA non-coding upstream 56774 40422721 ~ 40423860 (-)
G2029815 NA non-coding upstream 58545 40424492 ~ 40427847 (-)
G2029826 LOC106587774 non-coding upstream 92620 40458567 ~ 40462857 (-)
G2028779 NA other downstream 1104734 39229129 ~ 39233948 (-)
G2028777 LOC106587714 other downstream 1108485 39226363 ~ 39227059 (-)
LOC110506757 LOC106562446 other downstream 1831409 38411123 ~ 38504156 (-)
G2029844 NA other upstream 141799 40507746 ~ 40508282 (-)
G2029858 fbn1 other upstream 185232 40551179 ~ 40567512 (-)
G2030106 NA other upstream 409767 40775714 ~ 40778988 (-)
G2030157 NA other upstream 521656 40887603 ~ 40888684 (-)
G2030162 NA other upstream 532523 40898470 ~ 40899021 (-)

Expression


Co-expression Network