LOC110506134 (LOC106587633)


Basic Information

Item Value
gene id LOC110506134
gene name LOC106587633
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40296124 ~ 40307911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036963648.1
TCCGGTGTAGAGCGAGTCCATGCTTGCTCGGCTTCAGAGTACATATACAATTGCTCTAAATCAATTGGACCAAGTCTCATTTTAAACAGTCAGTAGGATGTCCAGTTCGGACGTGCTAGCCAGTCCCAGTGGTGTGGACGTGTCCTCCTCTCCCAAATCACCACTGGCTAAAACCCAACAACCTGACAAGGACTCCAAACCAGTAACCAAACAGAACCCtgtccctgcctcccctcccctccatggTCTGAAGCTGGCTCCACACAGGGAGCTGGAGCAGGCGCAGCAGAGGGGCAGGCTGAAGTGTTCTAGCTGTGGAGGCTCCCGGATGTTCTTCTGCTACACCTGCTGCTCTTTAGTGGGCGTCAGCCAGCAGGAAATCCCCTCTGTCAAGCTCCCTATAAAGATTGACATCATCAAGCATCCCAGTGAGGTTGATGGGAAGAGCACAGCCATACACGCCAAGATCCTCGCCCCCGATGATGTCACCATCTACACCTACCCCTGCATACCTGAGTATGAAGATGACAAAGTAGTGCTGGTGTTCCCTGGTCCtggatcagtctcagtggaggAGATGACATGCAGATTACAGAATCTGGCTGTCATGAAGTCAGCTGCCTCCCCAGATGAGGAACCGTCCCCAAAGAGGCCCAGAGCCGAGGAGACGCCAGGGGCCACACAGCAGGCTGAGGGACACACATCAGgagccacacacacagaagagaggggaggggaagcaGGGATAGAGGGCCAGACTGAGACACCAGGGGCCTGTCCCCTCCAGAGAGTGGTGTTCATCGACAGCACATGGAACCAGACCACCAGAATCATCACAGATGAGAGACTACAGGCAGCGTTGCTCCGTGTGGAGCTGAAGACCAGGAAGACGTGTTTCTGGCGCCATCAGAAAGGTTCTCCAGACACCTACCTGGCAACCATAGAGGCTGTCTACTACTTCCTCAAGGACTACCAGGAGCTGTGTCTGAGACAGGAGTACACAGGACAGTACGACAACCTGATGTACTTCTACTGTTACCTACACACACTGATCAACAAGGCTAAGACAACCGCTGGGAGACGCTGAggctgcagggaggagagagaggccaaAACTACTGCTGAGAGACGCAGAgcctgcagggaggagaggggCCAAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGCAGAGACTGCagataggagagaggggccaAAACTACCGCTGGGAGATACAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACcgctgaga
>XM_036963649.1
TCCGGTGTAGAGCGAGTCCATGCTTGCTCGGCTTCAGAGTACATATACAATTGCTCTAAATCAATTGGACCAAGTCTCATTTTAAACAGTCAGTAGGATGTCCAGTTCGGACGTGCTAGCCAGTCCCAGTGGTGTGGACGTGTCCTCCTCTCCCAAATCACCACTGGCTAAAACCCAACAACCTGACAAGGACTCCAAACCAGTAACCAAACAGAACCCtgtccctgcctcccctcccctccatggTCTGAAGCTGGCTCCACACAGGGAGCTGGAGCAGGCGCAGCAGAGGGGCAGGCTGAAGTGTTCTAGCTGTGGAGGCTCCCGGATGTTCTTCTGCTACACCTGCTGCTCTTTAGTGGGCGTCAGCCAGCAGGAAATCCCCTCTGTCAAGCTCCCTATAAAGATTGACATCATCAAGCATCCCAGTGAGGTTGATGGGAAGAGCACAGCCATACACGCCAAGATCCTCGCCCCCGATGATGTCACCATCTACACCTACCCCTGCATACCTGAGTATGAAGATGACAAAGTAGTGCTGGTGTTCCCTGGTCCtggatcagtctcagtggaggAGATGACATGCAGATTACAGAATCTGGCTGTCATGAAGTCAGCTGCCTCCCCAGATGAGGAACCGTCCCCAAAGAGGCCCAGAGCCGAGGAGACGCCAGGGGCCACACAGCAGGCTGAGGGACACACATCAGgagccacacacacagaagagaggggaggggaagcaGGGATAGAGGGCCAGACTGAGACACCAGGGGCCTGTCCCCTCCAGAGAGTGGTGTTCATCGACAGCACATGGAACCAGACCACCAGAATCATCACAGATGAGAGACTACAGGCGTTGCTCCGTGTGGAGCTGAAGACCAGGAAGACGTGTTTCTGGCGCCATCAGAAAGGTTCTCCAGACACCTACCTGGCAACCATAGAGGCTGTCTACTACTTCCTCAAGGACTACCAGGAGCTGTGTCTGAGACAGGAGTACACAGGACAGTACGACAACCTGATGTACTTCTACTGTTACCTACACACACTGATCAACAAGGCTAAGACAACCGCTGGGAGACGCTGAggctgcagggaggagagagaggccaaAACTACTGCTGAGAGACGCAGAgcctgcagggaggagaggggCCAAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGCAGAGACTGCagataggagagaggggccaAAACTACCGCTGGGAGATACAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACcgctgaga
>TU2321392
GAGCGAGTCCATGCTTGCTCGGCTTCAGAGTACATATACAATTGCTCTAAATCAATTGGACCAAGTCTCATTTTAAACAGTAGGATGTCCAGTTCGGACGTGCTAGCCAGTCCCAGTGGTGTGGACGTGTCCTCCTCTCCCAAATCACCACTGGCTAAAACCCAACAACCTGACAAGGACTCCAAACCAGTAACCAAACAGAACCCtgtccctgcctcccctcccctccatggTCTGAAGCTGGCTCCAC

Function

NR:

description
DTW domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036963648.1 False 1365 mRNA 0.54 5 40296124 40307911
XM_036963649.1 False 1362 mRNA 0.54 5 40296124 40307911
TU2321392 True 250 lncRNA 0.52 2 40302904 40307902

Neighbor

gene id symbol gene type direction distance location
LOC110506132 LOC106562499 coding downstream 26272 40213044 ~ 40269852 (-)
pldn pldn coding downstream 95208 40197134 ~ 40200916 (-)
LOC110526651 LOC106562502 coding downstream 145348 40138871 ~ 40150776 (-)
LOC110513022 LOC106587669 coding downstream 159433 40044093 ~ 40136691 (-)
LOC110516672 NA coding downstream 252427 40039396 ~ 40043697 (-)
LOC110519217 LOC106587666 coding upstream 27633 40335544 ~ 40365947 (-)
dut dut coding upstream 355607 40663518 ~ 40667842 (-)
LOC110506139 slc12a1 coding upstream 372510 40680421 ~ 40736226 (-)
LOC110519157 slc24a5 coding upstream 496192 40804103 ~ 40832292 (-)
LOC118944423 NA coding upstream 563521 40871432 ~ 40873618 (-)
G2029616 NA non-coding downstream 1470 40294307 ~ 40294654 (-)
G2029615 LOC106562504 non-coding downstream 3785 40290170 ~ 40292339 (-)
G2029594 NA non-coding downstream 51991 40243910 ~ 40244133 (-)
G2029593 NA non-coding downstream 57386 40238378 ~ 40238738 (-)
G2029592 NA non-coding downstream 58352 40237507 ~ 40237772 (-)
G2029782 NA non-coding upstream 43489 40351400 ~ 40351785 (-)
G2029802 NA non-coding upstream 86500 40394411 ~ 40475370 (-)
G2029800 NA non-coding upstream 88777 40396688 ~ 40485446 (-)
G2029814 NA non-coding upstream 114810 40422721 ~ 40423860 (-)
G2029815 NA non-coding upstream 116581 40424492 ~ 40427847 (-)
G2028779 NA other downstream 1065314 39229129 ~ 39233948 (-)
G2028777 LOC106587714 other downstream 1069065 39226363 ~ 39227059 (-)
LOC110506757 LOC106562446 other downstream 1791989 38411123 ~ 38504156 (-)
G2029844 NA other upstream 199835 40507746 ~ 40508282 (-)
G2029858 fbn1 other upstream 243268 40551179 ~ 40567512 (-)
G2030106 NA other upstream 467803 40775714 ~ 40778988 (-)
G2030157 NA other upstream 579692 40887603 ~ 40888684 (-)
G2030162 NA other upstream 590559 40898470 ~ 40899021 (-)
G2029619 NA non-coding downstream 1263 40301428 ~ 40301641 (-)
G2029618 NA non-coding downstream 5287 40297418 ~ 40297617 (-)

Expression


Co-expression Network