RNA id: XM_036963648.1


Basic Information

Item Value
RNA id XM_036963648.1
length 1365
RNA type mRNA
GC content 0.54
exon number 5
gene id LOC110506134
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40296124 ~ 40307911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGGTGTAGAGCGAGTCCATGCTTGCTCGGCTTCAGAGTACATATACAATTGCTCTAAATCAATTGGACCAAGTCTCATTTTAAACAGTCAGTAGGATGTCCAGTTCGGACGTGCTAGCCAGTCCCAGTGGTGTGGACGTGTCCTCCTCTCCCAAATCACCACTGGCTAAAACCCAACAACCTGACAAGGACTCCAAACCAGTAACCAAACAGAACCCtgtccctgcctcccctcccctccatggTCTGAAGCTGGCTCCACACAGGGAGCTGGAGCAGGCGCAGCAGAGGGGCAGGCTGAAGTGTTCTAGCTGTGGAGGCTCCCGGATGTTCTTCTGCTACACCTGCTGCTCTTTAGTGGGCGTCAGCCAGCAGGAAATCCCCTCTGTCAAGCTCCCTATAAAGATTGACATCATCAAGCATCCCAGTGAGGTTGATGGGAAGAGCACAGCCATACACGCCAAGATCCTCGCCCCCGATGATGTCACCATCTACACCTACCCCTGCATACCTGAGTATGAAGATGACAAAGTAGTGCTGGTGTTCCCTGGTCCtggatcagtctcagtggaggAGATGACATGCAGATTACAGAATCTGGCTGTCATGAAGTCAGCTGCCTCCCCAGATGAGGAACCGTCCCCAAAGAGGCCCAGAGCCGAGGAGACGCCAGGGGCCACACAGCAGGCTGAGGGACACACATCAGgagccacacacacagaagagaggggaggggaagcaGGGATAGAGGGCCAGACTGAGACACCAGGGGCCTGTCCCCTCCAGAGAGTGGTGTTCATCGACAGCACATGGAACCAGACCACCAGAATCATCACAGATGAGAGACTACAGGCAGCGTTGCTCCGTGTGGAGCTGAAGACCAGGAAGACGTGTTTCTGGCGCCATCAGAAAGGTTCTCCAGACACCTACCTGGCAACCATAGAGGCTGTCTACTACTTCCTCAAGGACTACCAGGAGCTGTGTCTGAGACAGGAGTACACAGGACAGTACGACAACCTGATGTACTTCTACTGTTACCTACACACACTGATCAACAAGGCTAAGACAACCGCTGGGAGACGCTGAggctgcagggaggagagagaggccaaAACTACTGCTGAGAGACGCAGAgcctgcagggaggagaggggCCAAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGCAGAGACTGCagataggagagaggggccaAAACTACCGCTGGGAGATACAGAGACtgcagataggagagagaggccaAAACTACCGCTGAGAGACGAAGAGACtgcagataggagagagaggccaAAACTACcgctgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321391 lncRNA downstream 1470 40294307 ~ 40294654 (-) True G2029616
TU2321390 lncRNA downstream 3785 40290170 ~ 40292339 (-) True G2029615
TU2321360 lncRNA downstream 51991 40243910 ~ 40244133 (-) True G2029594
TU2321359 lncRNA downstream 57386 40238378 ~ 40238738 (-) True G2029593
TU2321358 lncRNA downstream 58352 40237507 ~ 40237772 (-) True G2029592
TU2321591 lncRNA upstream 43489 40351400 ~ 40351785 (-) True G2029782
TU2321614 lncRNA upstream 86500 40394411 ~ 40475370 (-) True G2029802
TU2321611 lncRNA upstream 88777 40396688 ~ 40485446 (-) False G2029800
TU2321627 lncRNA upstream 114810 40422721 ~ 40423860 (-) True G2029814
TU2321631 lncRNA upstream 116581 40424492 ~ 40427847 (-) True G2029815
XM_036964132.1 mRNA downstream 26272 40213412 ~ 40269852 (-) False LOC110506132
XM_036964133.1 mRNA downstream 27461 40213412 ~ 40268663 (-) False LOC110506132
XM_021585492.2 mRNA downstream 95208 40197134 ~ 40200916 (-) False pldn
XM_021585493.2 mRNA downstream 95304 40197134 ~ 40200820 (-) False pldn
NM_001160589.2 mRNA downstream 95395 40197140 ~ 40200729 (-) False pldn
XM_036963650.1 mRNA upstream 27633 40335544 ~ 40365947 (-) True LOC110519217
XM_036963536.1 mRNA upstream 355607 40663518 ~ 40666752 (-) False dut
XM_036963537.1 mRNA upstream 355607 40663518 ~ 40667842 (-) True dut
XM_036963880.1 mRNA upstream 372510 40680421 ~ 40736226 (-) True LOC110506139
XM_036963288.1 mRNA upstream 496192 40804103 ~ 40832292 (-) True LOC110519157
TU2321323 other downstream 26349 40267249 ~ 40269775 (-) True LOC110506132
TU2321319 other downstream 95309 40198816 ~ 40200815 (-) True pldn
TU2320355 other downstream 1065314 39229129 ~ 39230810 (-) False G2028779
TU2320356 other downstream 1065610 39229129 ~ 39230514 (-) False G2028779
TU2320352 other downstream 1069065 39226363 ~ 39227059 (-) True G2028777
TU2321668 other upstream 199835 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 243268 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 467803 40775714 ~ 40778988 (-) True G2030106
TU2322044 other upstream 579692 40887603 ~ 40888684 (-) True G2030157
TU2322050 other upstream 590559 40898470 ~ 40899021 (-) True G2030162

Expression Profile