RNA id: TU2321988


Basic Information

Item Value
RNA id TU2321988
length 2486
RNA type TUCP
GC content 0.46
exon number 3
gene id G2030106
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40775714 ~ 40778988 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAttttctcctctatccctctctcccactattttctctctctcctctctctctcttgccaccTGCTGCTCAGTCATACCCCAGGCAGAAAGAGGCTAGTGTTGGTATCGTATGAGAGCAGTCCTCATTCCTCACAGACCTCTGTCTTTTCTCCTTTCTGTTATCATGTGTTGTCAGTCTACATCACCTCCTTTTGTGATGAGATTACACCATCTGGCCAGCTGCTACTCACAACAAGCAACAGCATGCAGGCTTCTCCCCGTCTGGGCGTGTGTTGACCATGTGAAGCTAGCTTCCTGCTATGAGCGTGTGTTCaccagggtcatattcattagtgtACACTGTAGCaaaatggaaaacaaaaacaagcgtttctcattggacaagtccaggtagtcccccctgtttcagtccgttttcttcAGTTTGGTGCTAGTGAACACCACCCATGTGTAGCCTCCACTATAACCACTCCCCGACTGCTATGagtgacagtgaaatgcttctcaACTCCTTGATCCTGTCGGAGCAGAAGGCAGCATTTGCCTTCATAGGGATGTTGCTGCTGGTCCTGGGCCTGCTCATAGTCCGGTGTTTCAGGATCCTTCTGGACCCCTACAGTAGCATGCCCTCCTCCAACTGGTCTGATGGGATAGAGGGCCTGGAGAAAGGGACATTTGAATATGCACTGACCTAACACAGAAGGATACACACATCACATACATTGATTGCAGAGGCACGTATGCACgtacacaagcatgcacacaggAACGAGTATGcattcatgcacacacacgcagaaaacacacacacaccacagacacattAGATCCCAGCCAGCCCCTGAAAACTGGAATGAATTAACTTAAGATGAAGCTGTTTCTGTGAGCTTTTACTGAAACTCTGTCCAGCTCATTGTCTTAGGTAGGCTTTGCTTTCGTCGTCCGAGGGACTACAGCGTCACGTAGGACTGACGCCACCTGTGGAAAGACAATGCGTTCCACATGGGTAACATGTGAGTTGGTATTGAGCCTGgttagagagaacagagaaccaTGCCTGTGGCAAGATGGAGGTCTCAGGGAAAACCACACATCTAGTGATTAATTTGGAGAAAGGTGAGAACGGACTAATTCTGATCCTGATTCAGACAGGAGtaacatggaggagaggatcccATCTTTCACATGGCTCTACTCTACACAACACAGCAATGTACGGATGGAAACAGGGTAATACAAGAATACCATACCAGAGCTAATCAACCATCAAAGTGCTGTTTGCCTGTCATCCTAATGGATTGTTGTGTAGTTCATTTAGGACGGTCCTATAGAACAAGATTGTTATATTATAGTAAGACTGATATTGACTGACCAACATTGTTCTCAGTTTCAAACAGATGATGTTAATAATGTTGATGATGgcgaagatgaggaggagaagaaggatgatgataatgatgatgatattttttttatttaacctttatttaactaggcaagtcagttaagaacaaatccttatttacaatgatggcctacttgggccaaacccggacgacgctgggccaattatgtgccgcgctatgggactcccaatcacggccggatgtgatacagcctggatgatgatgatggggatgataacattgatgatgatggtggtgatgataataatgatgatgataacatTGACGATGATAATGACTAGTGCATTACATGTGTGTCATGTTCTTTTGTAAACCTACTGATCTGGCAGAGAGATACTATCTCTGAACTGTgatttatctggacatggtgtaCAGAACTGTTTCTAATCAATGCAGCAATGGTCTTCAGAGtgagtactgtatgtatgtagtgttgatgagataagagaagagaagagaagaggctgTCATCTCGGAGACAAAGGTTTTTAACGTTGGGAGAGTCTTGTCACTGGCTGTCTCCTGAGGGAAAGGTTACTGGGATAATGATGGTGGAGGAGTCCACACTGCACACACCTCACCCTTCTTCACACCTCCTACCCTGCACAGTCTCATCCCCTCCTCACCCATCCTCCCCTGCACATgagtccctctctcacccctcctctcTGGCACAAGActacctctctcacccctcctcatgCTTCttaccccctccttcctctcctttatctactcacccttcctcctcctcacacaTACTCACTCCTCCACACCATCCTCCTCACTCTTCCTCACTCCTCCTAACCctaggaatggaggagagagccCTCACCCAGACAGAAACAGAATGTTCATCTCAGTGCTGTGAATCTGCCTTACTGTGACCTATGGGTTTACGTGCCTTTGTTTAGAAATAtttgcccgtgtgtgtgtgtgcacatgcttgtgtgtgtatctgtgtgtgcacgcacgtgtgtgtgtgatcatgcttgtatgtgtgcgtgcgtatgtcaTGATGACTGATGACGGTGTATCTACTCCACTGTTGCTCAGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321772 lncRNA downstream 11102 40764369 ~ 40764612 (-) True G2029934
TU2321757 lncRNA downstream 61591 40711330 ~ 40714123 (-) True G2029919
TU2321755 lncRNA downstream 65932 40709459 ~ 40709782 (-) True G2029918
TU2321745 lncRNA downstream 102140 40672703 ~ 40673574 (-) True G2029908
TU2321744 lncRNA downstream 104034 40671267 ~ 40671680 (-) True G2029907
TU2322004 lncRNA upstream 21920 40800908 ~ 40827265 (-) True G2030117
TU2322018 lncRNA upstream 65762 40844750 ~ 40845691 (-) True G2030131
TU2322027 lncRNA upstream 85251 40864239 ~ 40864519 (-) True G2030140
TU2322032 lncRNA upstream 89984 40868972 ~ 40869245 (-) True G2030145
TU2322034 lncRNA upstream 93199 40872187 ~ 40872582 (-) True G2030147
XM_036963880.1 mRNA downstream 39488 40680421 ~ 40736226 (-) True LOC110506139
XM_036963537.1 mRNA downstream 107872 40663518 ~ 40667842 (-) True dut
XM_036963536.1 mRNA downstream 108962 40663518 ~ 40666752 (-) False dut
XM_036963650.1 mRNA downstream 409767 40335544 ~ 40365947 (-) True LOC110519217
XM_036963648.1 mRNA downstream 467803 40296124 ~ 40307911 (-) False LOC110506134
XM_036963288.1 mRNA upstream 25115 40804103 ~ 40832292 (-) True LOC110519157
XM_036963625.1 mRNA upstream 92444 40871432 ~ 40872675 (-) False LOC118944423
XM_036964529.1 mRNA upstream 159042 40938030 ~ 40983366 (-) False LOC110519559
XM_036964532.1 mRNA upstream 159042 40938030 ~ 40983646 (-) False LOC110519559
XM_036964531.1 mRNA upstream 159042 40938030 ~ 40983647 (-) False LOC110519559
TU2321690 other downstream 208202 40551179 ~ 40567512 (-) False G2029858
TU2321668 other downstream 267432 40507746 ~ 40508282 (-) True G2029844
TU2321323 other downstream 505939 40267249 ~ 40269775 (-) True LOC110506132
TU2321319 other downstream 574899 40198816 ~ 40200815 (-) True pldn
TU2320355 other downstream 1544904 39229129 ~ 39230810 (-) False G2028779
TU2322044 other upstream 108615 40887603 ~ 40888684 (-) True G2030157
TU2322050 other upstream 119482 40898470 ~ 40899021 (-) True G2030162
TU2322043 other upstream 127635 40906623 ~ 40907193 (-) True G2030156
TU2322188 other upstream 432489 41211477 ~ 41211852 (-) True G2030291
TU2322603 other upstream 682869 41461857 ~ 41463190 (-) False LOC110515873

Expression Profile