RNA id: XM_036963880.1


Basic Information

Item Value
RNA id XM_036963880.1
length 5677
RNA type mRNA
GC content 0.48
exon number 26
gene id LOC110506139
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 40680421 ~ 40736226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGGTTGGTAGAACCGCTGGTTCAGCCAATGGCTGAGTCCCAGGCAGAGCCCAGCATAGGGGCCAGGAGGATATAAAGCTGGGGTGGCAGAGCCAACCTCAGCCTATATGACAGGTCTATAGGTCAGCTCTGGACCTACACAAGGATTTAACTAAACAGAATCAGATGAACCAACACTAGTCTGTCGTACCAGCGCTCCAAACCCATAGCTGCCGATTGCTTCTCATACTTAGACAGTCTCTAGGCCCTGACCAGAGGACTGAAGGACCTCAGTATTCCTTTTCTGTAGTGTTTGACCTGTAGAAGCCAGTAGGTGTGAGGAGCCTGTATTTACAGCCAGTCTGATGGAGAATGATGCCTATGACAGGATCGGGGACGAACCCCCTAACTACGAGGAGACGTCTTTCTCCGGTGGTACCACCTCTAACGGTAATGGGACCGGTAACGGAGAGCACCGggctgtccgtccgtccgtggtCAGTGCGTTTGGTCATGACACGCTGGACCGCGTGCCCAACATCGACTTCTACCGGAATGCTGGGAGTGTGAGCGGTAACCGTGCGGTCCGACCGTCCCTGCAGGAGCTCCACGATGTCTTCcagaagaATGGAAGGATCTCAGTGACGAACAcggtggaggacagagagggcagcGACGGGACGCCGTCAGACGATGTGGAGTCTGTCATTCCCCTGGACAACAAAGATGGAACCGTGAGGTTTGGCTGGATAAAGGGAGTCCTGGTGAGATGTATGTTGAACATCTGGGGTGTGATGCTGTTCATCCGTCTGTCCTGGGTGTTTGGACAGGCCGGCTGGGGTCTGGGCATTGTGGTCATTGCTCTGAGCTGTGTGGTGACCACCGTCACAGGTCTCTCCATGTCTGCTATCTGCACCAATGGAGTGGTACGAGGAGGAGGGGCGTACTACCTGATATCACGTAGTCTGGGACCAGAGTTTGGCGGTTCCATTGGTCTCATCTTCGCCTTCGCTAACGCTGTTGCCGTGGCGATGTACGTGGTGGGCTTCGCAGAGACTGTGGTTGACCTACTCAAGGAAAACAATGCCATTATGATAGATGAGCTGAATGACATCAGGATCATCGGCTGTATCTCGGTGGTACTGCTGCTGGGGATCTCAGTGGCCGGGATGGAGTGGGAGGCCAAGGCCCAGATCGGTTTGCTGATCATCCTCCTGGTAGCCATCGTCAACGTCTTCGTAGGAACTGGCATCCCAGCCTCCACCGACAAGAAGTCTAAAGGATTCTTTAACTACGACGCCAAAATATTTATGGAGAACTTACCGCCGGACTTCCGAGATGGAGAGACGTTCTTCTCTGTGTTCGCCATCTTCTTCCCTGCTGCCACGGGTATCCTGGCTGGagctaacatctctggagacctgaagGATCCCCAGGATGCTCTCCCTAAAGGAACCCTGCTGGCCATCCTCATCACTGGAGTCACATACCTGGGAGTTGCCCTCTGTGTCTCTGCCACGGTGGTGCGTGATGCAACAGGAAACATCAACGACACCATTGCCACAGGGATGGACATGTTCTGTAACGGTAGCAACACTGCTGCCTGTGAGCAGGGATGGAACTTCTCCTCCTGTGATGTCAGCAGCTGCAAGTTTGGCTCCATGAACAACTTCCAGGTGATGACCATGGTGTCAGGGTTCGGTCCTCTCATCACAGCAGGAACCTTCTCTGCCACCCTCTCCTCCGCCCTCGCCTCCCTCGTCAGCGCACCCAAAGTCTTCCAGgCTCTGTGTAAAGACAACATCTACACTGCACTGAAGTTCTTCGCCAAGGGACACGGCAAGAACAACGAGCCAATCAGAGGCTACGTTCTGACTTTCATCATCGCTGTCGCCTTCATAATCATCGccgaTCTGAACGTCATTGCGCCCATCATCTCCAACTTCTTCCTGGCATCGTACGCCCTCATCAACTTCTCCTGCTTCCACGCTTCATACGCTAAGTCACCAGGCTGGAGGCCAGCGTACAGGTACTACAACATGTGGTTGTCTCTGTTTGGAGCGGTGCTCTGCTGTGGTGTGATGTTTGTCATCAACTGGTGGGCTGCTCTCCTCACCTACGCAATCGAGATCTTCCTATATGTCTACGTCACTGTCAAGAAGCCAAATGTGAACTGGGGCTCGTCCACTCAGGCCGTGACGTTTGTCAGCGCGGTCAACAACGCTCTGTCACTGACCGGAGTAGAGGACCATGTTAAGAACTTCAGAcctcagtgtatggtgctgacaGGAGCACCTAAGAACAGACCGGCACTCCTGGACCTGGCTCATTGTTTCACTAAGAACTACGGACTCTGTCTCACATGTGAAGTCTTTGTGGGCCCCAGAACAGAGACATTGACAGATGTGAACGCTGGAATGGAGAAGAACCAGATGTGGCTgaataagaagaagagaaaagCCTTCTATGCTGCAGTGGCCTGTGACTCCTTCAGACAGGGAACTGAGAACCTCATGCAGGCATCAGGTCTGGGTCGTCTGAAACCCAACATTCTGATGATGGGCTTCAAGAAGGACTGGAGGACAGCAGACACAGCCGGCGTACAGAGCTATGTAGGAGTACTGCACGATGCATTTGACTTTGAGTACGGAACCGTGGTACTAAGGATGAACCAGGGACTGGACATCTCACACATCATAAAGGCTCAGGaggagatggagagagaagccCAGGAGCAGAAGGATCTGGAGAAAGAAGAGCTGGCTGAGGAGAATAAGGGGAAATCCATCTTCAGGAAGTCACGGAACTTATCTACACAAGGCCTCACTTCCAGAGCATCAGTGACGACCCCCCAGTCTCCCCAGGTAGTGGTAGTGAATGAAAGGCTGGTGTCCAACAGCACTCAGTTCCAGAGGAAACAGGGCAAAGGAACCATCGATGTCTGGTGGATGTTTGATGACGGAGgtcTAACCCTACTGCTGCCCTACATCCTGACAACCCGTAAGAAGTTCAAAGACTGCAAGATGAGGATCTTCATCGCTGGCCAGCCGGGACGTGTCGAGCAGGACAGGCATGAGATGAAGTCTCTGCTGGAGAAGTTCAGGATCAAATATGCAGACATCCACGTCATCGACGACATCACCCAAAACCCCAACTCTAACAGCTGGAAGATGTTTGAGGACATGATTGAGCCGTTCCGTCTTCACGAGGGGTCAAAGAGCACCACTCTGGCCGAGGCTCTGAGGAAAGACAACCCCTGGAAGATCTCTGACGCCGAGCTGGACACCTTCGAGGAAAAGaccAACCTCCAGGTCAGGCTGAATGAACTACTGCAGGAGAACTCCCGAGCTGCCAACCTCATCATAGTGAGTATGCCCATCGCCCGTCTAGGCTCAGTCTCTGACCACCTCTACATGGCCTGGTTGGACATCCTCACCAAGAACCTCCCTCCCACCATGTTGATCAGAGGCAACCACAAGAGCGTCCTCACCTTCTACTCATAGACCGACCCTCTCAGCAGTCACTAGATGGCCACAAGGGACAACCAAGGCACTTTCATCAATATCCAGGAGTTAGTTGCTATCAGTTTAAATGAAAAGGTGATGGTTAGAGATAAGGTTATGGGAAAGGTTAAAGGTTAGAAAGTGAGGCTCTTCCGTCTTGTCTAGCATGACCAAATAGTGATGACAcaacacagacatatggactcAGGGATATATGGGCACAAGGACCGGACACTGCCTGGGATGGGTCAATTACACTGCCTGGGATGGGTCAATTACACTGCCAATGCCTATGCTGCCCCCCGTTGGAATTGTACATGTGGTGCATAATTAGGGGTCCAAACCCTGAATCGGGCTGGAAAACtcgtattattatatatattagtCATGtaacagatgctcttatccagagcaacttacagttagtgtTCTTGTTAAGgatattattattctgacatattattattattattccaatTTTAAGAGAGCTATAGTGCTTAAATAGTTTGACCTATAGAGACCAAACTTGGAGGGATGGTGTAAATTGGTGACCCAATACATCTGGTAAATCTTTGGTATTTGACACAGAGTGGGACTGGGATGTTAGATAACAGACTGGTCCCAGGCTAGTTGGAGCCCCCTGCTGGCTATGCATCTCAACACGGTATACTTTTTCCTTAAATGTGCACTTGTCCACTACCCAgatagtggtcctctgtagcacagttggtagagcatggtgcttgcaatgccaggatagtgggtttgatatCTGGGACCATTcatatgtaaaacatttttggCAAGCATGACAGTAAGTTTCTTTAGATATAAGTGTCTGATAAATGGCATAAATGATATTAGTCTAAGAGCAAAAGATTGAGTCAAGACCAGAACCTGTAGTTCATACATACAGACTCCTCCATAGTTCTCAACCCTGAGGCCGGCATGGGCTAGTCCCTTCGTCTTGTACATGCCAACCCATGGCGGcccaggttcaaatcccaccactgctgCTTTCAGATAGACATCCCTAAACACAGAGTTGGTGTTGTGGCTAAATTTGATGACTTAAATAAGGGCAAAATATTTGAGGAAGAGTCAAAAGGCTTGGGCCCAGGTCATTGCTGCTTGCAGCTAGCCTATATGTATAATTCTTCTTTTGGGGGAACAACAGATgatacacactgtacacaaaacattaagaacacctgctctttccatgacatagactgaccaggtgaaagctatgatcccttattgatgtcacttgttaaatccacttcgatcAGTATAGATGaacgggaggagacaggttaaagaaggatttttaagccttgtgacaattgagacatgtattgtgtatgagtgccattcagagggtgaatggccaagacaaaatatttaagtgcctttgaacggggtatggcagtaggtgtcaggtgcaccagtttgtgtcaagaactgtaatgctgttgggtttttcacactcaacagtttcccatgtgtatcaagaaaggtccaccaccctaaggacatccagccaacttgacacaactgtggaaaacattggagtcaacatgggccagcattcctgtggaacgctaattgaggctgttctgcgaGCAACtcaaggtgtccttaatgttttgtacactgtgtatgtaGGCTAGTATACACAAATATGATGGTGTTCTAGGAAATGAACATTATAGCAAACAAATGACCTATGCAAAAAGTGatcaatatataaataaataaataaatatatatatatatatatatattcaaatgCTACTAGCGGCGTTGAtaacttgatttaaaaaaaataagattaGTTTGATATCCattgaaaaatactgtatactactTTGTATAGATGTGTATATTCCACACAAGTAGCTACTAGTTGAGTGTCTCGGGAAATAATGAAGGGATCACTTACTACCTtaatgcacacgcacgcacacacacacacacacacacacacacacacactgtgatgaAAATCTATCAAACAGAACAGGAAAATGTAAATCAACTTATGTGCTGTATATTTTCAATATAGAAATGCTtgatttatttctgtgttttaacCATTGTCTTTTATAAGACTCAGTCCTTATCATATTTAACTGTCATATTTTAATTACTGTATTATGAAGAAGGAATAAAATGTTGAGTTACTCTTA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K14425 SLC12A1, NKCC2; solute carrier family 12 (sodium/potassium/chloride transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2321745 lncRNA downstream 6847 40672703 ~ 40673574 (-) True G2029908
TU2321744 lncRNA downstream 8741 40671267 ~ 40671680 (-) True G2029907
TU2321712 lncRNA downstream 97809 40581285 ~ 40582612 (-) True G2029876
TU2321686 lncRNA downstream 113609 40565734 ~ 40566812 (-) True G2029858
TU2321683 lncRNA downstream 131844 40548322 ~ 40548577 (-) True G2029857
TU2321772 lncRNA upstream 28143 40764369 ~ 40764612 (-) True G2029934
TU2322004 lncRNA upstream 64682 40800908 ~ 40827265 (-) True G2030117
TU2322018 lncRNA upstream 108524 40844750 ~ 40845691 (-) True G2030131
TU2322027 lncRNA upstream 128013 40864239 ~ 40864519 (-) True G2030140
TU2322032 lncRNA upstream 132746 40868972 ~ 40869245 (-) True G2030145
XM_036963537.1 mRNA downstream 12579 40663518 ~ 40667842 (-) True dut
XM_036963536.1 mRNA downstream 13669 40663518 ~ 40666752 (-) False dut
XM_036963650.1 mRNA downstream 314474 40335544 ~ 40365947 (-) True LOC110519217
XM_036963648.1 mRNA downstream 372510 40296124 ~ 40307911 (-) False LOC110506134
XM_036963649.1 mRNA downstream 372510 40296124 ~ 40307911 (-) False LOC110506134
XM_036963288.1 mRNA upstream 67877 40804103 ~ 40832292 (-) True LOC110519157
XM_036963625.1 mRNA upstream 135206 40871432 ~ 40872675 (-) False LOC118944423
XM_036964529.1 mRNA upstream 201804 40938030 ~ 40983366 (-) False LOC110519559
XM_036964532.1 mRNA upstream 201804 40938030 ~ 40983646 (-) False LOC110519559
XM_036964531.1 mRNA upstream 201804 40938030 ~ 40983647 (-) False LOC110519559
TU2321690 other downstream 112909 40551179 ~ 40567512 (-) False G2029858
TU2321668 other downstream 172139 40507746 ~ 40508282 (-) True G2029844
TU2321323 other downstream 410646 40267249 ~ 40269775 (-) True LOC110506132
TU2321319 other downstream 479606 40198816 ~ 40200815 (-) True pldn
TU2320356 other downstream 1449907 39229129 ~ 39230514 (-) False G2028779
TU2321988 other upstream 39488 40775714 ~ 40778988 (-) True G2030106
TU2322044 other upstream 151377 40887603 ~ 40888684 (-) True G2030157
TU2322050 other upstream 162244 40898470 ~ 40899021 (-) True G2030162
TU2322043 other upstream 170397 40906623 ~ 40907193 (-) True G2030156
TU2322188 other upstream 475251 41211477 ~ 41211852 (-) True G2030291

Expression Profile