RNA id: TU2320356


Basic Information

Item Value
RNA id TU2320356
length 1386
RNA type TUCP
GC content 0.48
exon number 1
gene id G2028779
representative False

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39229129 ~ 39233948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtccaaacttttgaatggtactgtacattCAAAAACGTACCTTTTTACATCTTCTATTGAATATCATATCTTTGTTTCTTTGTCAGACTCCAGACTTCAGTACTCCTGCCAGTAGAAATGTTTCTCCTCCAATAGCAGCCCAAATGAAAGTTTCAGCAGCATTAGAATGATTATCATGGATGTTTTAGATGTTGACCCCAAATTAGTAAAAGGCATggtttttcatctctctctctcatcctttctcAGCTCAAACTCATTGGACAGTACACAACTCAACACTTCACACCTCTGTTTTTATATCAATGTCCATCTAATATATTTGTATCCATCTTATTATTATACAGTTTTTTTCTCTCTTACAATTGATGTTCATATGAAGTAATAGAAAATAAAGGCAACTGTTCTGTTGGTTGAATAATATGTGTTTCCTCCCAGGCCTATAACAGACCTCAGATGTCTCATTTTATGTCGTTTTATAACTCTGTTGCCTTGTCTCTTAGTAAAAATAAAGTACCTTGAAATGACCTGAATTTCCAAAGTAAAACATGAGCTCAGAAAATGTCCTCCGTTCAGTCTGAACGGAGAAAAAGGAAGAGGGTCAGCGAAGGGGGCGGTCCTTGGCTtgtaacaggaagtgacttgtgGGAGAAGATTGAAGGTTAATTCCCATTCAGATGGAGCAGCCCTCCATTCCTGTCTACAGCCTTCCTTTACttcctcctatcctccctccaCGTATGTCCTCTCAGAGGAGGCCTCTTTTTCATTCACTCCATCGCTCAGTCTTTCTCACTTGTCTATAAGGAAGCCTCCCATCCAGCGGAACTTGCAGGCAACCCACCGTCTGAGAGGGCAGAAATACTCAAAGTGGAACTGCTGGAACTCAGGCGTCTTGCGTATGTCCCGGAGGAAGGCGATGTCCAGGTCAGACTCAGTCAGCATGATGAGGAGGGAGAGCAGGGCAAACAGCAGTCCCATGGTCACCAGGAACATACGCAACACACTCAGGATGAACTTATGTAGCTCCTGCACCTCCTTGTTAGGGAGAGACTTCCTGGTCCGACCCAGCCGAAGCACTCTGCCGTCGGGGCCAAACTCAGCCACCTGTCCCTCAGGAGTCCCGGCCTCCGACTCCTCCTCTTCGATGCTGCAGGGGGCTCCATTAGGGTGGCGTGCCACAGCTAGCTCTAGGCTGTGTTCAGCCGTGGGGGTGGGCAGCACACTGTCTGAGGGGCAGTAGGCCTCGTCAGAGATGACCCGCTGGGATGACCCACCCTCGCCGGCATCTGTTGTGTGGTGACGGTGTCGCGGCATGAAGGAGTCGCCGTGGGAGACGGAACGCACGGGTGTGGAGTGGGCGGAGTCTCGTAGGGACTCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2320353 lncRNA downstream 824 39228062 ~ 39228305 (-) True G2028778
TU2320333 lncRNA downstream 8176 39182572 ~ 39220953 (-) True LOC110506770
TU2320348 lncRNA downstream 8872 39219349 ~ 39220257 (-) True G2028774
TU2320269 lncRNA downstream 83848 39106015 ~ 39145281 (-) True G2028708
TU2320231 lncRNA downstream 184687 39044223 ~ 39044442 (-) True G2028670
TU2320357 lncRNA upstream 136 39230650 ~ 39233844 (-) False G2028779
TU2320354 lncRNA upstream 433 39230947 ~ 39233844 (-) False G2028779
TU2320358 lncRNA upstream 433 39230947 ~ 39233948 (-) True G2028779
TU2320360 lncRNA upstream 6068 39236582 ~ 39236830 (-) False LOC118944513
TU2320361 lncRNA upstream 6399 39236913 ~ 39237116 (-) True LOC118944513
XR_002471033.2 mRNA downstream 4575 39220647 ~ 39224554 (-) False LOC110506770
XR_002471032.2 mRNA downstream 4579 39220647 ~ 39224550 (-) False LOC110506770
XR_005039798.1 mRNA downstream 126704 39087464 ~ 39102425 (-) True LOC110506758
XM_021586607.2 mRNA downstream 126715 39084335 ~ 39102414 (-) False LOC110506758
XR_005039851.1 mRNA upstream 5800 39236314 ~ 39241813 (-) False LOC118944513
XM_036963955.1 mRNA upstream 12525 39243039 ~ 39252048 (-) False LOC110506771
XM_036963954.1 mRNA upstream 12525 39243039 ~ 39252421 (-) False LOC110506771
XM_036963958.1 mRNA upstream 12525 39243039 ~ 39252421 (-) False LOC110506771
XM_036963956.1 mRNA upstream 12525 39243039 ~ 39252430 (-) False LOC110506771
TU2320352 other downstream 2070 39226363 ~ 39227059 (-) True G2028777
TU2319612 other downstream 724994 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 880773 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 1737713 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 1808092 37420411 ~ 37421037 (-) True G2026993
TU2321319 other upstream 968302 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1036735 40267249 ~ 40269775 (-) True LOC110506132
TU2321668 other upstream 1277232 40507746 ~ 40508282 (-) True G2029844
TU2321690 other upstream 1320665 40551179 ~ 40567512 (-) False G2029858
TU2321988 other upstream 1545200 40775714 ~ 40778988 (-) True G2030106

Expression Profile