RNA id: TU2319582


Basic Information

Item Value
RNA id TU2319582
length 3585
RNA type TUCP
GC content 0.49
exon number 12
gene id LOC110506753
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38334242 ~ 38373760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAGCAATAACCACGGATCGGGGAATTTTAACGTAGTCTACTGTCAACCTCAACAAGAGGAAATTGGATGTTGGACATGAAGTTAGCTAGTTAATGTCAAATTGATTCATTTGTTGTTGACAGAGCTAAGGTGTGGTGAAAAACAGTGTCAAGCCTATTAGGCCTAACTTCACAAGTCTTGTGTGTGAGACACCTCCAACATTAACATTCCAATGCCTCTgctgttcctggagaggtttcCCTGGCCCAGTCTGCAGACCTACACAGCGCTGAGTGTGGCTCTGCTGGCTGGAAGCATCTTCAGCGCCTACACTACTGTGACAGAACAGGGGTTCGGGGTTCCAGACATGGACGAGCCTCCACCACCTGCACCCTTAGTAGGGGATAATAGAGGCGGCCTAGGCCTAGAACGTGTGACTAGCGATGATGTTGTGGGTGCAGATACAGAATTGGCGACCACTGTTATGTGGTATCTGGTCACCGACAGTCTCTTTGTATGGGTGTTGGTGAATACAGCTTGCTGTTCTCTGATGTTAATTGCTAAGATGATCCAGTGCATGGTTTTTGGGCCCCTTCGAGTCAGTGAGAAGCAGCACCTTAAGGACAAGTTCTGGAACTTCATCTTCTATAAGTTCATCTTTATCTTCGGGGTGCTGAACGTTCagatggtggaggaggtggtcaTGTGGTGTCTGTGGTTCTCTGCCCTGGTCTTCCTCCACCTCATGGTCCAGCTGTGCAAGGACCGCTTTGAATATCTGTCCTTCTCTCCCACTACTTCTATGAACAGCCATGTGCGTGTCCTTACCCTACTGGTGTCCCTGCTGCTGGGCTGCTGTGGTCTGGCTGTGGTCTGTGGTCTGCTGGGCGCTGCCCATGGCATGCACACCCTCTCCTTCATGGCTGCCGAGtgTCTGCTGGTTACTGTGCGGACTGGACATGTCATCATGAGGTAAGACCCTTCCTTGCAGAATGCAGACCCTCTTGCACTGCAACACAGATGACATAGCGGATCTAGAATGAACCAGCAAACAAAAAtttagtttgctattcacaagaagcattgcctgatgtgaaccatgccttgaacgaaagagatctcagaagacctaagattaagaattgttgacttgcataaagctgggaagggttacaaaagtatctctaaaatccttgatgttcatcagtccacggtaagacaaattgtctataaatggagaaagttcagcactgttgctactctccctaggagtggccgtcctgcaaagatgactgcaaaagcacagcgcagaatgctcagtgAGGCAAAGAATAAtcttagagtgtcagctaaagacttacagaaatctttggatcatgctaacatctctgttggcgagtctacgatacgtaaaacaattaacaagaatggtgttcatgggaggacaccacggaagaagccactgctgtccaaaaaaaccattgctgcacatctgaagtttgcaaaagtgcacctggatgttccacagcgctactggcaaaatattctgtggacagatgaaactacagttgagttgtttggaaggaacactatgtgtggagaaaaaatgGCACACCAACATCAACCTCATCCAAACTGTAAAGTATgttggagggagcatcatggtttggggctgctttgctgcctcagggcctgtgGACAGCTTGCTGTCATTGACAGGAACAtgtattcccaagtttatcaaaacattttgcaggagaatgttaggttATCTGCCTGCCAATTGAaggtcaacagaagttgggtgatgcaacaggacaacgacccaaaacacagaggtaaatcaacaacagaatggcttcaactgaataaaatacgccttctggagtagCCCAGtctgagtcctgacctcaacccgatttgaggtgctgtggcatgacctcaagagagcagttcacaccagacatcccaacaatattgctgaactgaaacagttttgtaaagaggaatggtccaacattcctcctgaccattgtgcagtTCTGATCCGCAACttcagaaaacatttggttgaggttattgctgccaaaggagggtcaaacagttattaaatccaagggttcacatacttttcccaccctgcactgtgaatgtttacacggtgtgttcaataaagacatgaaaacgtgtaATTGTTTGTGTGCTATTAGTTTAAaaagactgtgtttgtctattgttgtgacctagatgaagagcAGATCAAATTCTATgatcaatttatgcagaaatccaggtatttccaaagggtttacatactttttcttgccaccgtaggtttcttcctaggttcctgcctttctagggagttattcctagccactgtgcttctatatctgcattgcttgctctttggggttttaggctgggtttctgtataagcacttagTGACAGCTACTTATGtacaaagggctttataaataaatttgctTGATTTGTGGTGTGTGCAATTCAAAAGCATAGGTGCAAAAATGTCCAAATAAAAAGGCATTATTGTGACCAGGGCAGGGTTCTGACTAAGTCTGTTTATCTGCAGGTACACCATTCACCTGTGGGATCTGAACCACCCAGGCACCTGGGAGAGTAAGGGTTCCTATGTCTACTACACTGACTTCATCATGGAGCTGTCTATGCTGTCCCTGGACCTTATGCACCACATTCACATGCTGCTCTTTGGTAATATCTGGCTGTCCATGGCCAGTCTGGTGATCTTCATGCAGCTGAGGTATCTGTTCCATGAGGTGCAGCGCCGCATCCGACGCCACAAGAACTACCTCCGTGTCATCAACAACATGGAGGCCAGGTTTGCAGTGGCCACATCCGAGGAGCTGGTAGCCAACAGCGATGACTGTGCCATATGCTGGGACACCATGCAGACAGCACGTAAACTGCCCTGCGGACACCTCTTCCACAATTCCTGCCTGCGGTCGTGGCTGGAGCAGGACACGTCGTGTCCAACATGCAGGATGTCCCTGAACATCAGTGGTGATGGAGGCCTGGCCAGAGGCCAGCAGCAGGGGGCTGGCCTCCCACTGGAGAACAACCTGGGCCCTGGGGGCCCCGCTGCAGACGCCAGACCACACCTCAACCAACACAATCACTTCTTCCACTTTGATGGCTCCCGCATCGCCAGCTGGCTGCCTAGTTTCTCAGTAGAGGTGATGCACACAACTAACATCCTGGCTATTGCTCAGCAGGCCAACAACTCTCAGCTCAACACCATGGCCCATCAGATCCAGGAAATGTTTCCTCAGGTTCCCTACCACTTGGTGCTGCAGGACCTGCAATTGACCCGCTCTGTGGAGGTCACCACCGACAACATCCTGGAGGGACGCATCGTGGTGCCCTTCCCTGCTCTGGCGGCTGAGCGTTCCCCCGTGCAGGTGAACCCAGGCccagaggagggggaaggagccAGTGGGGTAGTGGAGACTGCTCCCAGAGAGCTGAACAGCCTGGAGGTCAGAGGGAGCCGTTTCTCCAAGTctgcagaggagagacagaagatgCTGCTGCAGAGGAAGGATGAGCTGCTGCAACAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2319587 lncRNA downstream 597 38334242 ~ 38337256 (-) False LOC110506753
TU2319565 lncRNA downstream 43802 38293614 ~ 38294051 (-) True G2028109
TU2319564 lncRNA downstream 44768 38291715 ~ 38293085 (-) True G2028108
TU2319571 lncRNA downstream 46198 38291389 ~ 38291655 (-) True G2028115
TU2319569 lncRNA downstream 51023 38286565 ~ 38286830 (-) True G2028113
TU2319602 lncRNA upstream 524 38348880 ~ 38349115 (-) True G2028133
TU2319604 lncRNA upstream 2655 38351011 ~ 38351232 (-) True G2028135
TU2319608 lncRNA upstream 7610 38355966 ~ 38356599 (-) True G2028138
TU2319610 lncRNA upstream 56827 38405183 ~ 38407051 (-) True G2028140
TU2319611 lncRNA upstream 62776 38411132 ~ 38423582 (-) False LOC110506757
XM_036963304.1 mRNA downstream 4582 38300633 ~ 38333271 (-) True LOC110506754
XM_021586600.2 mRNA downstream 16288 38300633 ~ 38321565 (-) False LOC110506754
XM_021586593.2 mRNA downstream 115200 38126089 ~ 38222653 (-) False LOC110506750
XR_002471028.2 mRNA downstream 278831 38056139 ~ 38059022 (-) True LOC110506749
XR_005039854.1 mRNA downstream 537117 37799397 ~ 37800736 (-) False LOC118944515
XM_036964594.1 mRNA upstream 62767 38411123 ~ 38497234 (-) False LOC110506757
XM_036964592.1 mRNA upstream 62767 38411123 ~ 38504156 (-) False LOC110506757
XM_036964593.1 mRNA upstream 62767 38411123 ~ 38504156 (-) False LOC110506757
LOC110526638 mRNA upstream 453983 38802339 ~ 38819334 (-) True LOC110526638
XM_021586622.2 mRNA upstream 686588 39034944 ~ 39042496 (-) True LOC110506764
TU2318287 other downstream 846437 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 916816 37420411 ~ 37421037 (-) True G2026993
TU2317552 other downstream 1461750 36834733 ~ 36876103 (-) False LOC110506740
TU2317556 other downstream 1461857 36834733 ~ 36875996 (-) True LOC110506740
TU2316868 other downstream 1994419 36343156 ~ 36343434 (-) True G2025757
TU2319612 other upstream 132246 38480602 ~ 38504135 (-) True LOC110506757
TU2320352 other upstream 878007 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 880773 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 880773 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1850460 40198816 ~ 40200815 (-) True pldn

Expression Profile