G2028140


Basic Information

Item Value
gene id G2028140
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 38405183 ~ 38407051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2319610
AAAAAACGACTTTCATTTTTGTATGTTGTTGGTTCTTCCAGCCCCCCTGTGTGTTGCACATCACGACAAATGATCATTTTGTCTTCAGGACAAATATATGTATTTGTCAATCTTCCTCCTTGGGGAGACATACAGACTGCGAATGTATGGAATATGGATAGCAATAATAAAAAGATTTTCAGTTTGCCTGagaattacaacaacaaaaagtccAAAGAAAATGACAAAGCTGAGTGTTGAAAAGCAACATATTCTAGTCCAACATCATCATAAGGATGTTTCCAGAATGTGATTCTGAATGCTGGatagatgtatgtatgtatgccatACATTACGTAGTCATGCTGTAATATAACATGTTGATTGGTCTGGGTAGGAACAACTCCTATTGCCTTAACATGTTCTCTGTGATTGGACAATGATATATGTATATTCTTGCATGTATATTTTTTCTCTGAGAGGGTGTTGCTAATGACAACTgtcaatcatgtccaatcagaaaTAGAAAATAATTCTGCTATACACAAAAACCTGCCTGATgcctttaaaaacatttttttattattaaaaaagAACCTTGATGCCTATAGTTGTAGATGCAGCAGAGATGCTTGGTTCTGTTACTTCAAGACTCTGTTTACACAGGTAGttcaattctgatctttttctcACTAATCAGAACAGCCCTGAAAAAGTTCTGTGATTGGTCAAAGAACCAATTAGTGGaacaaatatcagaattgggctgcctgtataAACGCAGCCTTCTAGAGTATCAGCACAATACTTATTAGTCCTGCATACCAGAGGGCCAGTCAGTGAATCTGCCTTGTAAAGGACACAGGTCAAGCGTCTTAGTAGATTATATTAAGTGTGGATGTGTGCGTTTGTACCCAATAAACTGTAGATAAGTGTTTTTTTTATAATGAATTTCAGTTCTGTACAATACAAGCACACAGATGCATTAGGCTACTATGCAAACCATGACGAAAGCATCATGACGACGTGATATTTGGCATCGAGTACAAAataactggtttgtttgtaataATCTCGTGGCTTTTGTGTAAAACCTTTTCAAATAGTGAGGAAAGAATGTCACTATTTGTTTATTTAAACTATAGGAAGGCCTTAACTCATGTGTTAAATATGAATTACTGGTTTGTTGTCTGTATGCTCTTCTGGGTTAATAATTTACTTGAGAATATATATTTTGGACAGCAGGACGTTAGTTACAAGAGGAAGGGCTGGCTCTGGTGCTGCTTGTTACTGTTACCTGATTCACAGTATAGAGCTGATCAGAACCGTACTGTGCTGGCTTGGATGTTTCATTTTCACATGGTCCTTTCCAGCACAGTTCCCGCACTATGTAGATGCGTAAACAGGGCAGCCCAGTACAGCTCGGCTTGGCGCAGCTTGGCTCTATAGTGTGAATGAGGCATATGAGTCCAGAAACAAAAGCAGCATTAAATTCAGTAACCATTCGCTCTCTGCCATCCTCTTCTGTAAAACCAAAGATAAACAATATGTTCCCATTTTACATACTGGTAAAATGCAACACAGACTGACATTAGAACTCTATTTTTGATACTTTGAAATGGATGTCATTCCTAACGGTTGGGTGCATATATctataaatatatgttttgtaaAAGAAAAGGGAAATACAGGTTTTAGCTGATGTTTACAGGAACCTTGTATTGTCATTTCATGtacattttgtattttaaaaCCATTTTGTAATTTAAGACTGCAGTGCTTTTTGAACGTATTCTAAGGGAATACCTTGCATTTAGGCTCTTACAGTAGtgtatcaataaaaatacaaacgtcaatctggggctcttacagtagtgtatcaataaaaat

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2319610 True 1869 lncRNA 0.37 1 38405183 38407051

Neighbor

gene id symbol gene type direction distance location
LOC110506753 LOC106587607 coding downstream 31423 38334242 ~ 38373760 (-)
LOC110506754 LOC106587610 coding downstream 71912 38300633 ~ 38333271 (-)
LOC110506750 LOC106562417 coding downstream 182530 38126089 ~ 38222653 (-)
LOC110506749 NA coding downstream 346161 38056139 ~ 38059022 (-)
LOC118944515 NA coding downstream 604447 37798150 ~ 37800786 (-)
LOC110506757 LOC106562446 coding upstream 4072 38411123 ~ 38504156 (-)
LOC110526638 LOC107739100 coding upstream 395288 38802339 ~ 38819334 (-)
LOC110506764 LOC106587718 coding upstream 627893 39034944 ~ 39042496 (-)
LOC110506767 NA coding upstream 646022 39053073 ~ 39054291 (-)
LOC110506765 sc11a coding upstream 653249 39060300 ~ 39068583 (-)
G2028138 NA non-coding downstream 48584 38355966 ~ 38356599 (-)
G2028135 NA non-coding downstream 53951 38351011 ~ 38351232 (-)
G2028133 NA non-coding downstream 56068 38348880 ~ 38349115 (-)
G2028109 LOC106562414 non-coding downstream 111132 38293614 ~ 38294051 (-)
G2028172 NA non-coding upstream 24231 38431282 ~ 38434423 (-)
G2028195 NA non-coding upstream 97518 38504569 ~ 38504856 (-)
G2028198 NA non-coding upstream 100039 38507090 ~ 38507341 (-)
G2028297 NA non-coding upstream 248643 38655694 ~ 38695321 (-)
G2027052 NA other downstream 913767 37490852 ~ 37491416 (-)
G2026993 NA other downstream 984146 37420411 ~ 37421037 (-)
LOC110506740 LOC106562403 other downstream 1529080 36793286 ~ 36913660 (-)
G2025757 NA other downstream 2061749 36343156 ~ 36343434 (-)
G2028777 LOC106587714 other upstream 819312 39226363 ~ 39227059 (-)
G2028779 NA other upstream 822078 39229129 ~ 39233948 (-)
pldn pldn other upstream 1791765 40197134 ~ 40200916 (-)
LOC110506132 LOC106562499 other upstream 1860198 40213044 ~ 40269852 (-)

Expression


Co-expression Network