LOC110506765 (sc11a)


Basic Information

Item Value
gene id LOC110506765
gene name sc11a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39060300 ~ 39068583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586623.2
CAAACCTTCTGTCTGCCAGCCCCCGTATCGCGAAGCGACACCTCGACAAAATATTTTGAATGTGGGAGGAACTTCCGGCTGAGTGTACCCGGAAGATTTGGATGCAAGTTTCTCGGACGTTCACCCATATGTTCGCTTTTTATGTATCGATCActggtttttatttaatttaggTAATTTTATAAACTCAATACTGGGACGATGTTGTCTTTAGATTTCCTTGATGATGTGCGGCGGATGAATAAGCGCCAGCTCTACTACCAGGTGCTTAATTTTGGTATGATAGTGTCCTCAGCCCTGATGATCTGGAAAGGACTGATGGTATTGACAGGCAGCGAGAGCCCTATTGTTGTCGTCCTCAGTGGAAGTATGGAGCCTGCTTTCCATCGAGGAGACCTTCTGTTCCTAACAAACCGGGTCGAGGACCCCATCAGAGTCGGAGAGATTGTGGTCTTCAGGATAGAGGGCAGAGAGATCCCCATAGTACACAGAGTACTAAAGATTCATGAAAAGGAAAATGGCGAAATCAAGTTCCTGACCAAAGGTGACAACAACTCTGTAGATGACAGAGGGCTGTACAAGCCGGGACAGCACTGGCTAGAGAAGAAAGACGTGGTGGGACGAGCCAGAGGGTTTGTGCCATACATCGGAATCGTTACCATTCTGATGAATGACTATCCCAAATTCAAGTACGCTGTTCTCTTCCTGCTGGGTCTGTTCGTCCTGGTCCATCGGGAGTGAGGAAGAGATCACCTAACTATCTACCACGGAGGAAGAATTGTAAATCCCCACCCCACCATGCCTTTCAAGACAGAATTATGTTGATTATGTCAAATTAAGTTGCTTTTTCTCTACCATGTGTTTTGAATTGTCTAGAAATGTGGATAGTGTTTACATTAAATAAAAACAAGCATTCATTATTTTTGTGAGGGAAATTAGATATAAGTTAAGTAGAATAAAGAGCtgtatttctttatttaatttttttcagAACATGAATCCAACATTTTAGATGGTTAATTGTGTATTTTGTTTTCACATTTAATTAGGTTTTGCTTTGCTTGATATATTGAATGACAAGTGATATGTTTGTGACATTAAATATGACATCTGTTACCCTCTATCCTTCAATCTGGTAA

Function

NR:

description
signal peptidase complex catalytic subunit SEC11A

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K13280 SEC11, sipW; signal peptidase I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586623.2 True 1139 mRNA 0.41 6 39060300 39068583

Neighbor

gene id symbol gene type direction distance location
LOC110506767 NA coding downstream 6009 39053073 ~ 39054291 (-)
LOC110506764 LOC106587718 coding downstream 17804 39034944 ~ 39042496 (-)
LOC110526638 LOC107739100 coding downstream 240966 38802339 ~ 38819334 (-)
LOC110506757 LOC106562446 coding downstream 556144 38411123 ~ 38504156 (-)
LOC110506753 LOC106587607 coding downstream 686540 38334242 ~ 38373760 (-)
LOC110506758 LOC106587719 coding upstream 15752 39084335 ~ 39102425 (-)
LOC110506770 NA coding upstream 152064 39182572 ~ 39224554 (-)
LOC118944513 NA coding upstream 167731 39236314 ~ 39241813 (-)
LOC110506771 LOC106562441 coding upstream 174456 39243039 ~ 39253846 (-)
LOC110506772 LOC106562440 coding upstream 188471 39257054 ~ 39266212 (-)
G2028670 NA non-coding downstream 15858 39044223 ~ 39044442 (-)
G2028669 NA non-coding downstream 17089 39042981 ~ 39043211 (-)
G2028665 NA non-coding downstream 26004 39033922 ~ 39034296 (-)
G2028664 NA non-coding downstream 26912 39032922 ~ 39033388 (-)
G2028502 NA non-coding downstream 46510 39013546 ~ 39013790 (-)
G2028708 NA non-coding upstream 37432 39106015 ~ 39145281 (-)
G2028774 LOC106594991 non-coding upstream 150766 39219349 ~ 39220257 (-)
G2028778 LOC100194703 non-coding upstream 159479 39228062 ~ 39228305 (-)
G2028779 NA non-coding upstream 162067 39229129 ~ 39233948 (-)
G2027052 NA other downstream 1568884 37490852 ~ 37491416 (-)
G2026993 NA other downstream 1639263 37420411 ~ 37421037 (-)
LOC110506740 LOC106562403 other downstream 2184197 36793286 ~ 36913660 (-)
G2028777 LOC106587714 other upstream 157780 39226363 ~ 39227059 (-)
pldn pldn other upstream 1130233 40197134 ~ 40200916 (-)
LOC110506132 LOC106562499 other upstream 1198666 40213044 ~ 40269852 (-)
G2029844 NA other upstream 1439163 40507746 ~ 40508282 (-)

Expression


Co-expression Network