LOC110506764 (LOC106587718)


Basic Information

Item Value
gene id LOC110506764
gene name LOC106587718
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39034944 ~ 39042496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586622.2
ACCGTCGGGTTGTTTTGATGATCTCATCTGCACACGTGACATATCCGCTCTTTTGGCGATTTTGTAGAAGAAGGTAGTGGGGCAGAACCTACCACTGCACTGAGGTATAATAAGAACGGACAGGACAGCCATTTTATTATCATAACAACATCCATGATCCATCCGAAATTACAGTAACATATTTGGATTCCAGCGCAACCATGGGCCAGTGTGGGATTACTTCATCAAAGACCGTCCTGGTGTTTCTGAATCTAATATTCTGGgcTGCAGCTGGAATTCTGTGTTACATTGGAGCCTATGTGTTCATCACATATGATGACTATGACCACTTCTTTGAGGATGTGTACACCTTGATCCCAGCGTCCATTATAATAGCAGTCGGGACTCTGCTGTTTATCATTGGGCTGATTGGATGCTGTGCCACAATACGGGAAAGCTCCTGCGGACTAACAGCTTTTGCTGTCATTCTCCTGCTGGTGTTTGTCACAGAAGTTGTTGTGGTTGTTATTGGTTATATCTACAGAGCTAGGGTGGAAGATCAGGTGAACCACTCCATTCAGAAGGTGTATGATGAATACAATGGCACCAACACAGATGCCCCCAGCCGAGCCATCGACTATGTGCAGAGACAGCTCCACTGCTGTGGCATTCACAACTACTCTGACTGGAGGAATACTCACTGGTTCAAGGAGTCCAGAAACAACAGTGTTCCAGTCAGCTGCTGTAAACCCAACATCAGCAACTGTACTGGAACCATGAGCCGGCCTGGTGACCTCTACCCAGAGGGCTGTGAAGCTCTTGTTGTgaaaaagctgaaagaaatcatgaTGTATGTCATTTGGGCTGCTCTGACCTTCGCTGCAATACAGATGCTGGGGATGCTGTGTGCCTGTGTGGTGCTGTGCAGGAGGGGGCACGACCCGGCCTATGAGCTACTGGTCACCGGAGCAACCTACGCATGAGGAGTACACAGGCCCCGCCCGCACCAAGGGCTCCACCAATAAGAATAAAGAAACGAAGCCTCACCTGACATGTCCACAATTTGTAGTTTTCAGTAGTAGTAAGCTCAAGCACACCTTGCACAGGATAACTATTGGGTATACACTGGCGATTGGGGGGGGGATCTGTGAAAATAGTTATTCATTGAACATGctttgtaaatgtatttttattttaaatgtgtttttttagaCACTGGAACGCCTAAGGCCAAAGTTGTTAAATGGCGAATtgatgttgtttttgttttgctcATGAAATATAGCCTTGTCTATTTTCTTTTCCCTTTTGGGGCACAAGGGATGATTAGGGGCTCTTTATAGAAGAGAACTACTGCTCAGTGCAATATGTGGAATGTACTCCTTTCTCGTGTCATTTTGCACTATGACTAGAGCTCTGGAAGTATTTAAGGAATATTTAATGTGAATATTAGAAGTACCTTTATCTATAAGGGACCCTGTAGTTTACCACTAAATTGTGAGTCAGTCAACCCATCTCCAGTCTCCATTCATATGTAGTGTAGAGGTACTTTACCAGTGTTACCTAAGACCCATGTGTAGATAGAGCTTTGTGTTACAGCTTGGTACATATGTAGGTGTTTTCTGACACACACATTCTAATACCAAGTATGAAAGGGAAGGGATGAATCTCAATTGTATTTTCTTGATTCCTtgtcctctctccttgcctcctttTACAAAATGCATTGGAGGAGAAGATCCAAGTGGAGAAACCTCAGAGCTGTGCATTGAGAAGCTGAGGAGGGAGGACATGAGGAATACAATTGAGATTCAACCCTGCCTGGGAATTTGATGTAAACCACCAAAGAATTGGGGCTGTGACTGAGGGAGTCActtttgttgtgtttttgtggCATTGTGTATTATTTTTCAAACGGAAGTTGATATTTGGACTTGTAGCATTGCAGAAAATGTGAAACAAAATCATGTAAATAAATTGAGGAGAGGAAAGAACTTTGATTGAAATAAACCTAAATTTAAactaaaa

Function

NR:

description
tetraspanin-3-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17293 TSPAN3; tetraspanin-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586622.2 True 2007 mRNA 0.43 7 39034944 39042496

Neighbor

gene id symbol gene type direction distance location
LOC110526638 LOC107739100 coding downstream 215610 38802339 ~ 38819334 (-)
LOC110506757 LOC106562446 coding downstream 530788 38411123 ~ 38504156 (-)
LOC110506753 LOC106587607 coding downstream 661184 38334242 ~ 38373760 (-)
LOC110506754 LOC106587610 coding downstream 701673 38300633 ~ 38333271 (-)
LOC110506750 LOC106562417 coding downstream 812291 38126089 ~ 38222653 (-)
LOC110506767 NA coding upstream 10577 39053073 ~ 39054291 (-)
LOC110506765 sc11a coding upstream 17804 39060300 ~ 39068583 (-)
LOC110506758 LOC106587719 coding upstream 41839 39084335 ~ 39102425 (-)
LOC110506770 NA coding upstream 178151 39182572 ~ 39224554 (-)
LOC118944513 NA coding upstream 193818 39236314 ~ 39241813 (-)
G2028665 NA non-coding downstream 648 39033922 ~ 39034296 (-)
G2028664 NA non-coding downstream 1556 39032922 ~ 39033388 (-)
G2028502 NA non-coding downstream 21154 39013546 ~ 39013790 (-)
G2028500 NA non-coding downstream 24743 39009821 ~ 39010201 (-)
G2028457 NA non-coding downstream 98134 38935003 ~ 38936810 (-)
G2028669 NA non-coding upstream 485 39042981 ~ 39043211 (-)
G2028670 NA non-coding upstream 1727 39044223 ~ 39044442 (-)
G2028708 NA non-coding upstream 63519 39106015 ~ 39145281 (-)
G2028774 LOC106594991 non-coding upstream 176853 39219349 ~ 39220257 (-)
G2027052 NA other downstream 1543528 37490852 ~ 37491416 (-)
G2026993 NA other downstream 1613907 37420411 ~ 37421037 (-)
LOC110506740 LOC106562403 other downstream 2158841 36793286 ~ 36913660 (-)
G2028777 LOC106587714 other upstream 183867 39226363 ~ 39227059 (-)
G2028779 NA other upstream 186633 39229129 ~ 39233948 (-)
pldn pldn other upstream 1156320 40197134 ~ 40200916 (-)
LOC110506132 LOC106562499 other upstream 1224753 40213044 ~ 40269852 (-)
G2029844 NA other upstream 1465250 40507746 ~ 40508282 (-)

Expression


Co-expression Network