RNA id: XM_021586622.2


Basic Information

Item Value
RNA id XM_021586622.2
length 2007
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110506764
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39034944 ~ 39042496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCGTCGGGTTGTTTTGATGATCTCATCTGCACACGTGACATATCCGCTCTTTTGGCGATTTTGTAGAAGAAGGTAGTGGGGCAGAACCTACCACTGCACTGAGGTATAATAAGAACGGACAGGACAGCCATTTTATTATCATAACAACATCCATGATCCATCCGAAATTACAGTAACATATTTGGATTCCAGCGCAACCATGGGCCAGTGTGGGATTACTTCATCAAAGACCGTCCTGGTGTTTCTGAATCTAATATTCTGGgcTGCAGCTGGAATTCTGTGTTACATTGGAGCCTATGTGTTCATCACATATGATGACTATGACCACTTCTTTGAGGATGTGTACACCTTGATCCCAGCGTCCATTATAATAGCAGTCGGGACTCTGCTGTTTATCATTGGGCTGATTGGATGCTGTGCCACAATACGGGAAAGCTCCTGCGGACTAACAGCTTTTGCTGTCATTCTCCTGCTGGTGTTTGTCACAGAAGTTGTTGTGGTTGTTATTGGTTATATCTACAGAGCTAGGGTGGAAGATCAGGTGAACCACTCCATTCAGAAGGTGTATGATGAATACAATGGCACCAACACAGATGCCCCCAGCCGAGCCATCGACTATGTGCAGAGACAGCTCCACTGCTGTGGCATTCACAACTACTCTGACTGGAGGAATACTCACTGGTTCAAGGAGTCCAGAAACAACAGTGTTCCAGTCAGCTGCTGTAAACCCAACATCAGCAACTGTACTGGAACCATGAGCCGGCCTGGTGACCTCTACCCAGAGGGCTGTGAAGCTCTTGTTGTgaaaaagctgaaagaaatcatgaTGTATGTCATTTGGGCTGCTCTGACCTTCGCTGCAATACAGATGCTGGGGATGCTGTGTGCCTGTGTGGTGCTGTGCAGGAGGGGGCACGACCCGGCCTATGAGCTACTGGTCACCGGAGCAACCTACGCATGAGGAGTACACAGGCCCCGCCCGCACCAAGGGCTCCACCAATAAGAATAAAGAAACGAAGCCTCACCTGACATGTCCACAATTTGTAGTTTTCAGTAGTAGTAAGCTCAAGCACACCTTGCACAGGATAACTATTGGGTATACACTGGCGATTGGGGGGGGGATCTGTGAAAATAGTTATTCATTGAACATGctttgtaaatgtatttttattttaaatgtgtttttttagaCACTGGAACGCCTAAGGCCAAAGTTGTTAAATGGCGAATtgatgttgtttttgttttgctcATGAAATATAGCCTTGTCTATTTTCTTTTCCCTTTTGGGGCACAAGGGATGATTAGGGGCTCTTTATAGAAGAGAACTACTGCTCAGTGCAATATGTGGAATGTACTCCTTTCTCGTGTCATTTTGCACTATGACTAGAGCTCTGGAAGTATTTAAGGAATATTTAATGTGAATATTAGAAGTACCTTTATCTATAAGGGACCCTGTAGTTTACCACTAAATTGTGAGTCAGTCAACCCATCTCCAGTCTCCATTCATATGTAGTGTAGAGGTACTTTACCAGTGTTACCTAAGACCCATGTGTAGATAGAGCTTTGTGTTACAGCTTGGTACATATGTAGGTGTTTTCTGACACACACATTCTAATACCAAGTATGAAAGGGAAGGGATGAATCTCAATTGTATTTTCTTGATTCCTtgtcctctctccttgcctcctttTACAAAATGCATTGGAGGAGAAGATCCAAGTGGAGAAACCTCAGAGCTGTGCATTGAGAAGCTGAGGAGGGAGGACATGAGGAATACAATTGAGATTCAACCCTGCCTGGGAATTTGATGTAAACCACCAAAGAATTGGGGCTGTGACTGAGGGAGTCActtttgttgtgtttttgtggCATTGTGTATTATTTTTCAAACGGAAGTTGATATTTGGACTTGTAGCATTGCAGAAAATGTGAAACAAAATCATGTAAATAAATTGAGGAGAGGAAAGAACTTTGATTGAAATAAACCTAAATTTAAactaaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17293 TSPAN3; tetraspanin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2320226 lncRNA downstream 648 39033922 ~ 39034296 (-) True G2028665
TU2320224 lncRNA downstream 1556 39032922 ~ 39033388 (-) True G2028664
TU2320222 lncRNA downstream 1677 39032922 ~ 39033267 (-) False G2028664
TU2320038 lncRNA downstream 21154 39013546 ~ 39013790 (-) True G2028502
TU2320036 lncRNA downstream 24743 39009821 ~ 39010201 (-) True G2028500
TU2320230 lncRNA upstream 485 39042981 ~ 39043211 (-) True G2028669
TU2320231 lncRNA upstream 1727 39044223 ~ 39044442 (-) True G2028670
TU2320269 lncRNA upstream 63519 39106015 ~ 39145281 (-) True G2028708
TU2320333 lncRNA upstream 140076 39182572 ~ 39220953 (-) True LOC110506770
TU2320348 lncRNA upstream 176853 39219349 ~ 39220257 (-) True G2028774
LOC110526638 mRNA downstream 215610 38802339 ~ 38819334 (-) True LOC110526638
XM_036964592.1 mRNA downstream 530788 38411123 ~ 38504156 (-) False LOC110506757
XM_036964593.1 mRNA downstream 530788 38411123 ~ 38504156 (-) False LOC110506757
XM_036964594.1 mRNA downstream 537710 38411123 ~ 38497234 (-) False LOC110506757
XM_036963303.1 mRNA downstream 661184 38335951 ~ 38373760 (-) False LOC110506753
XR_002471030.2 mRNA upstream 10577 39053073 ~ 39054291 (-) True LOC110506767
XM_021586623.2 mRNA upstream 17804 39060300 ~ 39068583 (-) True LOC110506765
XM_021586604.2 mRNA upstream 41839 39084335 ~ 39102414 (-) False LOC110506758
XM_021586605.2 mRNA upstream 41839 39084335 ~ 39102414 (-) False LOC110506758
XM_021586606.2 mRNA upstream 41839 39084335 ~ 39102414 (-) False LOC110506758
TU2319612 other downstream 530809 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 686588 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 1543528 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 1613907 37420411 ~ 37421037 (-) True G2026993
TU2317556 other downstream 2158948 36834733 ~ 36875996 (-) True LOC110506740
TU2320352 other upstream 183867 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 186633 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 186633 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1156320 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1224753 40267249 ~ 40269775 (-) True LOC110506132

Expression Profile