RNA id: TU2320226


Basic Information

Item Value
RNA id TU2320226
length 375
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G2028665
representative True

Chromosome Information

Item Value
chromosome id NC_048590.1
NCBI id CM023244.2
chromosome length 51113553
location 39033922 ~ 39034296 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaacatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgttgccaccaccatgtttgatagtggggatggtgtgatcaGGGtgatgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagag

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2320224 lncRNA downstream 534 39032922 ~ 39033388 (-) True G2028664
TU2320222 lncRNA downstream 655 39032922 ~ 39033267 (-) False G2028664
TU2320038 lncRNA downstream 20132 39013546 ~ 39013790 (-) True G2028502
TU2320036 lncRNA downstream 23721 39009821 ~ 39010201 (-) True G2028500
TU2319977 lncRNA downstream 97112 38935003 ~ 38936810 (-) True G2028457
TU2320230 lncRNA upstream 8685 39042981 ~ 39043211 (-) True G2028669
TU2320231 lncRNA upstream 9927 39044223 ~ 39044442 (-) True G2028670
TU2320269 lncRNA upstream 71719 39106015 ~ 39145281 (-) True G2028708
TU2320333 lncRNA upstream 148276 39182572 ~ 39220953 (-) True LOC110506770
TU2320348 lncRNA upstream 185053 39219349 ~ 39220257 (-) True G2028774
LOC110526638 mRNA downstream 214588 38802339 ~ 38819334 (-) True LOC110526638
XM_036964592.1 mRNA downstream 529766 38411123 ~ 38504156 (-) False LOC110506757
XM_036964593.1 mRNA downstream 529766 38411123 ~ 38504156 (-) False LOC110506757
XM_036964594.1 mRNA downstream 536688 38411123 ~ 38497234 (-) False LOC110506757
XM_036963303.1 mRNA downstream 660162 38335951 ~ 38373760 (-) False LOC110506753
XM_021586622.2 mRNA upstream 648 39034944 ~ 39042496 (-) True LOC110506764
XR_002471030.2 mRNA upstream 18777 39053073 ~ 39054291 (-) True LOC110506767
XM_021586623.2 mRNA upstream 26004 39060300 ~ 39068583 (-) True LOC110506765
XM_021586604.2 mRNA upstream 50039 39084335 ~ 39102414 (-) False LOC110506758
XM_021586605.2 mRNA upstream 50039 39084335 ~ 39102414 (-) False LOC110506758
TU2319612 other downstream 529787 38480602 ~ 38504135 (-) True LOC110506757
TU2319582 other downstream 685566 38337853 ~ 38348356 (-) True LOC110506753
TU2318287 other downstream 1542506 37490852 ~ 37491416 (-) True G2027052
TU2318224 other downstream 1612885 37420411 ~ 37421037 (-) True G2026993
TU2317556 other downstream 2157926 36834733 ~ 36875996 (-) True LOC110506740
TU2320352 other upstream 192067 39226363 ~ 39227059 (-) True G2028777
TU2320355 other upstream 194833 39229129 ~ 39230810 (-) False G2028779
TU2320356 other upstream 194833 39229129 ~ 39230514 (-) False G2028779
TU2321319 other upstream 1164520 40198816 ~ 40200815 (-) True pldn
TU2321323 other upstream 1232953 40267249 ~ 40269775 (-) True LOC110506132

Expression Profile